RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1057075" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1057075 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19302319 19302319 PRJNA1057075_S_NODE_6856_length_179_cov_1.923077_g6757_i0 PRJNA1057075 6856 179 1.923077 3.44230783 Nematostella vectensis 45351 Cnidaria other_Eukaryota 52.8 0.015   NTclustered gi|2257893142|ref|XM_001628947.3| 45351 g6757 i0 100 0.156424581005587 28 0 16 0 3 30 536 563 PREDICTED: Nematostella vectensis 40S ribosomal protein S18 (LOC5508386), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Edwardsiidae Nematostella Nematostella vectensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;