RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1057075" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1057075 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7829189 7829189 PRJNA1057075_S_NODE_2507_length_264_cov_15.851163_g2408_i0 PRJNA1057075 2507 264 15.851163 41.84707032 Cairina moschata 8855 Chordata Chordata 52.8 0.024   NTclustered gi|2921975556|gb|CP130394.1| 8855 g2408 i0 100 0.106060606060606 28 0 11 0 52 79 1455432 1455405 Cairina moschata breed yongchun chromosome 17 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
10379883 10379883 PRJNA1057075_S_NODE_1909_length_288_cov_3.476987_g1810_i0 PRJNA1057075 1909 288 3.476987 10.01372256 Polypterus senegalus 55291 Chordata Chordata 337 6.57e-88   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g1810 i0 90.347 15.6319444444444 259 22 89 3 4 260 1430 1173 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 4502 337 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
12930334 12930334 PRJNA1057075_S_NODE_8851_length_164_cov_9.852174_g8752_i0 PRJNA1057075 8851 164 9.852174 16.15756536 Mus musculus 10090 Chordata Chordata 52.8 0.014   NTclustered gi|23304853|emb|AL731896.10| 10090 g8752 i0 100 0.170731707317073 28 0 17 0 72 99 157697 157724 Mouse DNA sequence from clone RP23-348D11 on chromosome 11, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
13764677 13764677 PRJNA1057075_S_NODE_6631_length_181_cov_2.727273_g6532_i0 PRJNA1057075 6631 181 2.727273 4.93636413 Metazoa 33208 Chordata Chordata 54.7 0.004   NTclustered gi|2805714469|emb|OZ078412.1| 7748 g6532 i0 100 2.22099447513812 29 0 16 0 48 76 12347930 12347958 Lampetra fluviatilis genome assembly, chromosome: 9 blastn 402 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
23128922 23128922 PRJNA1057075_S_NODE_9479_length_161_cov_2.687500_g9380_i0 PRJNA1057075 9479 161 2.6875 4.326875 Spinus spinus 160760 Chordata Chordata 56.5 0.001   NTclustered gi|2917630213|emb|OZ228722.1| 160760 g9380 i0 100 0.186335403726708 30 0 19 0 21 50 55958275 55958304 Spinus spinus genome assembly, chromosome: 5 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;