RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA1057075" and tax_kingdom = "Fungi"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA1057075 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1011332 1011332 PRJNA1057075_S_NODE_1601_length_305_cov_5.835938_g1502_i0 PRJNA1057075 1601 305 5.835938 17.7996109 root 1 Root_unresolved Root_unresolved 52.8 0.028   NTclustered gi|2837842073|ref|XM_069420121.1| 89139 g1502 i0 100 0.19672131147541 28 0 9 0 31 58 2292 2265 Rasamsonia byssochlamydoides uncharacterized protein (VTN77DRAFT_41), partial mRNA blastn 60 52.8 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Rasamsonia Rasamsonia byssochlamydoides
2727086 2727086 PRJNA1057075_S_NODE_2163_length_277_cov_1277.412281_g2064_i0 PRJNA1057075 2163 277 1277.412281 3538.43201837 uncultured fungus 175245 Fungi Fungi 329 1.05e-85   NTclustered gi|583832671|gb|KF566234.1| 175245 g2064 i0 92.609 75.6714801444043 230 15 83 2 4 232 130 358 Uncultured soil fungus clone NCD_LSU_otu1264 28S ribosomal RNA gene, partial sequence blastn 20961 329 1 Eukaryota Opisthokonta Fungi           uncultured fungus
3562016 3562016 PRJNA1057075_S_NODE_863_length_367_cov_38221.251572_g764_i0 PRJNA1057075 863 367 38221.251572 140271.99326924 Ascomycota 4890 Fungi Fungi 542 1.6999999999999995e-149   NTclustered gi|1802567479|gb|MT000479.1| 45277 g764 i0 97.771 85.558583106267 314 7 86 0 50 363 315 2 Sarocladium kiliense strain LSU0027 large subunit ribosomal RNA gene, partial sequence blastn 31400 542 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Sarocladiaceae Sarocladium Sarocladium kiliense
4003063 4003063 PRJNA1057075_S_NODE_904_length_364_cov_9.558730_g805_i0 PRJNA1057075 904 364 9.55873 34.7937772 uncultured fungus 175245 Fungi Fungi 366 1.09e-96   NTclustered gi|2159202025|emb|OU940232.1| 175245 g805 i0 90.141 72.9615384615385 284 24 77 4 81 361 454 172 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01527 blastn 26558 366 1 Eukaryota Opisthokonta Fungi           uncultured fungus
11655159 11655159 PRJNA1057075_S_NODE_7310_length_175_cov_1.571429_g7211_i0 PRJNA1057075 7310 175 1.571429 2.75000075 uncultured fungus 175245 Fungi Fungi 311 2.2e-80   NTclustered gi|375156277|gb|JQ311626.1| 175245 g7211 i0 100 138.771428571429 168 0 96 0 1 168 283 450 Uncultured soil fungus clone OTU97-82 28S ribosomal RNA gene, partial sequence blastn 24285 311 1 Eukaryota Opisthokonta Fungi           uncultured fungus
14205269 14205269 PRJNA1057075_S_NODE_1692_length_299_cov_48.028000_g1593_i0 PRJNA1057075 1692 299 48.028 143.60372 uncultured fungus 175245 Fungi Fungi 385 2.41e-102   NTclustered gi|2159204433|emb|OU942835.1| 175245 g1593 i0 90.066 29.1973244147157 302 22 100 6 1 299 1864 1568 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus04129 blastn 8730 385 1 Eukaryota Opisthokonta Fungi           uncultured fungus
16313748 16313748 PRJNA1057075_S_NODE_873_length_366_cov_28363.782334_g774_i0 PRJNA1057075 873 366 28363.782334 103811.44334244 Ascomycota 4890 Fungi Fungi 542 1.69e-149   NTclustered gi|1473258532|gb|MH871476.1| 5046 g774 i0 97.771 85.792349726776 314 7 86 0 49 362 364 51 Sarocladium strictum culture CBS:376.70M strain CBS 376.70M large subunit ribosomal RNA gene, partial sequence blastn 31400 547 0.990859232175503 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Sarocladiaceae Sarocladium Sarocladium strictum
16753486 16753486 PRJNA1057075_S_NODE_1094_length_343_cov_35609.074830_g995_i0 PRJNA1057075 1094 343 35609.07483 122139.1266669 uncultured fungus 175245 Fungi Fungi 475 1.62e-129   NTclustered gi|583833157|gb|KF566720.1| 175245 g995 i0 95.918 111.880466472303 294 10 85 2 51 343 333 41 Uncultured soil fungus clone NCD_LSU_otu1750 28S ribosomal RNA gene, partial sequence blastn 38375 475 1 Eukaryota Opisthokonta Fungi           uncultured fungus
18028390 18028390 PRJNA1057075_S_NODE_215_length_519_cov_554.819149_g156_i0 PRJNA1057075 215 519 554.819149 2879.51138331 uncultured fungus 175245 Fungi Fungi 590 8.719999999999999e-164   NTclustered gi|583832972|gb|KF566535.1| 175245 g156 i0 92.875 84.4065510597302 407 27 78 2 19 424 1 406 Uncultured soil fungus clone NCD_LSU_otu1565 28S ribosomal RNA gene, partial sequence blastn 43807 590 1 Eukaryota Opisthokonta Fungi           uncultured fungus
19302307 19302307 PRJNA1057075_S_NODE_2796_length_254_cov_51176.985366_g2697_i0 PRJNA1057075 2796 254 51176.985366 129989.54282964 Trichoderma atroviride 63577 Fungi Fungi 86.1 2.27e-12   NTclustered gi|2749703766|ref|XM_014090103.2| 63577 g2697 i0 88 16.9173228346457 75 6 30 1 14 88 2269 2198 Trichoderma atroviride uncharacterized protein (TrAtP1_012533), partial mRNA blastn 4297 86.1 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Hypocreaceae Trichoderma Trichoderma atroviride
20137730 20137730 PRJNA1057075_S_NODE_1016_length_351_cov_339.536424_g917_i0 PRJNA1057075 1016 351 339.536424 1191.77284824 Ascomycota 4890 Fungi Fungi 529 1.2599999999999996e-145   NTclustered gi|1473258532|gb|MH871476.1| 5046 g917 i0 98.026 86.6096866096866 304 6 87 0 5 308 51 354 Sarocladium strictum culture CBS:376.70M strain CBS 376.70M large subunit ribosomal RNA gene, partial sequence blastn 30400 534 0.99063670411985 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Sarocladiaceae Sarocladium Sarocladium strictum
23128893 23128893 PRJNA1057075_S_NODE_319_length_472_cov_28828.252955_g156_i1 PRJNA1057075 319 472 28828.252955 136069.3539476 uncultured fungus 175245 Fungi Fungi 584 3.659999999999999e-162   NTclustered gi|583832972|gb|KF566535.1| 175245 g156 i1 92.629 92.7754237288136 407 28 86 2 49 454 406 1 Uncultured soil fungus clone NCD_LSU_otu1565 28S ribosomal RNA gene, partial sequence blastn 43790 584 1 Eukaryota Opisthokonta Fungi           uncultured fungus
23128896 23128896 PRJNA1057075_S_NODE_3739_length_230_cov_3.480663_g3640_i0 PRJNA1057075 3739 230 3.480663 8.0055249 uncultured fungus 175245 Fungi Fungi 340 3.91e-89   NTclustered gi|2159201316|emb|OU940146.1| 175245 g3640 i0 93.886 92.4913043478261 229 9 98 5 5 230 957 1183 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus01440 blastn 21273 340 1 Eukaryota Opisthokonta Fungi           uncultured fungus
23128904 23128904 PRJNA1057075_S_NODE_5699_length_192_cov_4.860140_g5600_i0 PRJNA1057075 5699 192 4.86014 9.3314688 Wickerhamiella azyma 5488 Fungi Fungi 73.1 1.27e-8   NTclustered gi|1209454344|ref|NG_055326.1| 5488 g5600 i0 80.412 8.90104166666667 97 17 50 2 74 169 3041 2946 Wickerhamiella azyma NRRL Y-17067 28S rRNA, partial sequence; from TYPE material blastn 1709 73.1 1 Eukaryota Opisthokonta Fungi Ascomycota Dipodascomycetes Dipodascales Trichomonascaceae Wickerhamiella Wickerhamiella azyma
26869200 26869200 PRJNA1057075_S_NODE_7841_length_171_cov_1.122951_g7742_i0 PRJNA1057075 7841 171 1.122951 1.92024621 Teratosphaeriaceae 668547 Fungi Fungi 47 1.43e-4   NR WPH01937.1 150365 g7742 i0 88.5 3.19298245614035 26 3 45.6 0 3 80 106 131 WPH01937.1 60S ribosomal protein L32 [Acrodontium crateriforme] diamond 546 47.4 0.991561181434599 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Mycosphaerellales Teratosphaeriaceae Acrodontium Acrodontium crateriforme
28077528 28077528 PRJNA1057075_S_NODE_8965_length_164_cov_1.313043_g8866_i0 PRJNA1057075 8965 164 1.313043 2.15339052 Rhizoclosmatium sp. JEL 2012244 Fungi Fungi 44.3 0.00264   NR KAJ3287761.1 2784343 g8866 i0 60 0.548780487804878 30 12 54.9 0 162 73 156 185 KAJ3287761.1 hypothetical protein HDU79_005437 [Rhizoclosmatium sp. JEL0117] diamond 90 44.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium sp. JEL0117

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;