RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1054617" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1054617 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27848326 27848326 PRJNA1054617_S_NODE_13944_length_159_cov_2.206897_g13856_i0 PRJNA1054617 13944 159 2.206897 3.50896623 FCB group 1783270 Bacteria Bacteria 57 3.4e-9   NR GAA9036680.1 210 g13856 i0 92.6 2.90566037735849 27 2 50.9 0 143 63 2 28 GAA9036680.1 hypothetical protein Kyoto181A_9030 [Helicobacter pylori] diamond 462 57 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32026839 32026839 PRJNA1054617_S_NODE_4398_length_256_cov_1.079812_g4310_i0 PRJNA1054617 4398 256 1.079812 2.76431872 Helicobacter pylori 210 Bacteria Bacteria 46.2 3.2e-4   NR GAA8565153.1 210 g4310 i0 100 0.97265625 17 0 19.9 0 53 3 33 49 GAA8565153.1 hypothetical protein oki142_14710 [Helicobacter pylori] diamond 249 46.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;