RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1054617", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1054617 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20577575 20577575 PRJNA1054617_S_NODE_15157_length_154_cov_1.657658_g15069_i0 PRJNA1054617 15157 154 1.657658 2.55279332 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 202 1.19e-47   NTclustered gi|1389430803|gb|MH341631.1| 1938391 g15069 i0 90.26 37.6883116883117 154 15 100 0 1 154 1908 2061 Chilodonella hexasticha strain C. hexasticha SC large subunit ribosomal RNA gene, partial sequence blastn 5804 202 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
23963700 23963700 PRJNA1054617_S_NODE_2739_length_308_cov_3.860377_g2651_i0 PRJNA1054617 2739 308 3.860377 11.88996116 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|299830252|ref|NC_014262.1| 5885 g2651 i0 92.105 0.493506493506494 38 3 12 0 1 38 1453 1490 Paramecium caudatum mitochondrion, complete genome blastn 152 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
24402475 24402475 PRJNA1054617_S_NODE_1860_length_356_cov_1.757188_g1772_i0 PRJNA1054617 1860 356 1.757188 6.25558928 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 486 7.79e-133   NTclustered gi|1389870282|gb|MH356267.1| 1654720 g1772 i0 92.69 18.4691011235955 342 17 95 8 1 337 344 682 Chilodonella piscicola strain SC small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 6575 486 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
27216596 27216596 PRJNA1054617_S_NODE_15662_length_152_cov_1.266055_g15574_i0 PRJNA1054617 15662 152 1.266055 1.9244036 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 47.8 1.82e-4   NR YP_004841738.1 5932 g15574 i0 69.2 4.04605263157895 26 8 51.3 0 70 147 107 132 YP_004841738.1 cytochrome c oxidase subunit 2 [Ichthyophthirius multifiliis] diamond 615 48.1 0.993762993762994 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;