RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1050291" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1050291 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27951403 27951403 PRJNA1050291_P_NODE_19645_length_247_cov_0.896552_g18754_i0 PRJNA1050291 19645 247 0.896552 2.21448344 Haloferula sargassicola 490096 Bacteria Bacteria 61.6 7.6e-9   NR WP_353566207.1 490096 g18754 i0 45.6 1.93117408906883 79 43 96 0 8 244 20 98 WP_353566207.1 hypothetical protein [Haloferula sargassicola] diamond 477 61.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Haloferula Haloferula sargassicola
29655898 29655898 PRJNA1050291_P_NODE_10890_length_361_cov_0.885417_g9999_i0 PRJNA1050291 10890 361 0.885417 3.19635537 Candidatus Didemnitutus sp. 2814259 Bacteria Bacteria 189 1.31e-57   NR HVU15522.1 2814259 g9999 i0 77.5 1.98614958448753 120 27 99.7 0 361 2 144 263 HVU15522.1 hypothetical protein [Candidatus Didemnitutus sp.] diamond 717 189 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Candidatus Didemnitutus Candidatus Didemnitutus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;