RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1050291", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 7 ✖

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1050291 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2726760 2726760 PRJNA1050291_P_NODE_8283_length_449_cov_1.492021_g7392_i0 PRJNA1050291 8283 449 1.492021 6.69917429 Sandaracinus amylolyticus 927083 Bacteria Bacteria 52.8 0.043   NTclustered gi|816953346|gb|CP011125.1| 927083 g7392 i0 100 0.0623608017817372 28 0 6 0 414 441 1830902 1830875 Sandaracinus amylolyticus strain DSM 53668, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
10379324 10379324 PRJNA1050291_P_NODE_21249_length_241_cov_2.672619_g20358_i0 PRJNA1050291 21249 241 2.672619 6.44101179 Bacteria 2 Bacteria Bacteria 126 1.3e-32   NR MFK7931048.1 2818507 g20358 i0 72.2 5.87551867219917 79 22 98.3 0 3 239 313 391 MFK7931048.1 hypothetical protein [Myxococcota bacterium] diamond 1416 127 0.992125984251969 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
17588913 17588913 PRJNA1050291_P_NODE_6354_length_565_cov_1.083333_g5463_i0 PRJNA1050291 6354 565 1.083333 6.12083145 Myxococcus 32 Bacteria Bacteria 56.5 0.004   NTclustered gi|2869653495|gb|CP175551.1| 33 g5463 i0 100 0.106194690265487 30 0 5 0 328 357 6439638 6439667 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 60 56.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
26837449 26837449 PRJNA1050291_P_NODE_11501_length_346_cov_2.146520_g10610_i0 PRJNA1050291 11501 346 2.14652 7.4269592 Pseudomonadati 3379134 Bacteria Bacteria 184 5.18e-57   NR NOJ99365.1 184914 g10610 i0 77.4 2.99132947976879 115 26 99.7 0 346 2 31 145 NOJ99365.1 glycosyltransferase [Corallococcus coralloides] diamond 1035 185 0.994594594594595 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
27058826 27058826 PRJNA1050291_P_NODE_4482_length_775_cov_3.649573_g3597_i0 PRJNA1050291 4482 775 3.649573 28.28419075 Archangium 47 Bacteria Bacteria 152 1.11e-40   NR MCC7384637.1 2026735 g3597 i0 39.1 1.95096774193548 258 136 96.4 7 28 774 56 301 MCC7384637.1 DNA/RNA non-specific endonuclease [Deltaproteobacteria bacterium] diamond 1512 152 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32461723 32461723 PRJNA1050291_P_NODE_9019_length_419_cov_2.624277_g8128_i0 PRJNA1050291 9019 419 2.624277 10.99572063 root 1 Root_unresolved Root_unresolved 53.9 2.85e-5   NR MCB9476354.1 2026735 g8128 i0 52.2 0.658711217183771 46 22 32.9 0 15 152 257 302 MCB9476354.1 ankyrin repeat domain-containing protein [Deltaproteobacteria bacterium] diamond 276 53.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32588285 32588285 PRJNA1050291_P_NODE_10419_length_374_cov_1.677741_g9528_i0 PRJNA1050291 10419 374 1.677741 6.27475134 Bacteria 2 Bacteria Bacteria 155 2.5499999999999994e-42   NR MCH8889566.1 2026763 g9528 i0 54.8 4.94919786096257 124 56 99.5 0 372 1 220 343 MCH8889566.1 phage terminase large subunit [Myxococcales bacterium] diamond 1851 155 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;