RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1050291" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1050291 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21853166 21853166 PRJNA1050291_P_NODE_9658_length_397_cov_2.391975_g8767_i0 PRJNA1050291 9658 397 2.391975 9.49614075 Chloroflexota bacterium 2026724 Bacteria Bacteria 73.1 2.92e-8   NTclustered gi|2621701252|emb|OY759972.1| 2026724 g8767 i0 92.157 0.337531486146096 51 4 13 0 131 181 1877916 1877966 MAG: Chloroflexota bacterium isolate 55c93f92-7b64-48b2-973a-1fcfb2e6d712 genome assembly, chromosome: 1 blastn 134 73.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27572430 27572430 PRJNA1050291_P_NODE_21064_length_242_cov_0.923077_g20173_i0 PRJNA1050291 21064 242 0.923077 2.23384634 Promineifilum sp. 2664178 Bacteria Bacteria 111 1.2e-26   NR MBP6016348.1 2664178 g20173 i0 87.3 0.78099173553719 63 8 78.1 0 54 242 367 429 MBP6016348.1 hypothetical protein [Promineifilum sp.] diamond 189 111 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Promineifilum sp.
29687597 29687597 PRJNA1050291_P_NODE_8750_length_430_cov_2.016807_g7859_i0 PRJNA1050291 8750 430 2.016807 8.6722701 Ktedonobacterales bacterium 2306968 Bacteria Bacteria 62.4 3.55e-8   NR HEY7350389.1 2306968 g7859 i0 29.9 0.934883720930233 134 79 83.7 5 24 383 212 344 HEY7350389.1 hypothetical protein [Ktedonobacterales bacterium] diamond 402 62.4 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;