RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1050291" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1050291 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18862615 18862615 PRJNA1050291_P_NODE_20355_length_244_cov_3.842105_g19464_i0 PRJNA1050291 20355 244 3.842105 9.3747362 Fragilaria 33644 SAR_Eukaryotes SAR_Eukaryotes 412 8.759999999999998e-111   NTclustered gi|18698483|gb|AF417684.1| 185980 g19464 i0 99.127 82.5983606557377 229 2 94 0 16 244 66 294 Fragilaria capucina strain M1767 large subunit ribosomal RNA gene, partial sequence blastn 20154 412 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria capucina
25237318 25237318 PRJNA1050291_P_NODE_17500_length_258_cov_4.600000_g16609_i0 PRJNA1050291 17500 258 4.6 11.868 Navicula 50949 SAR_Eukaryotes SAR_Eukaryotes 438 1.5399999999999995e-118   NTclustered gi|18698478|gb|AF417679.1| 186032 g16609 i0 99.177 94.4573643410853 243 2 94 0 2 244 326 84 Navicula cf. erifuga strain Navicula large subunit ribosomal RNA gene, partial sequence blastn 24370 438 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula cf. erifuga
32374963 32374963 PRJNA1050291_P_NODE_20139_length_245_cov_1.732558_g19248_i0 PRJNA1050291 20139 245 1.732558 4.2447671 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 121 3.73e-33   NR CAB9517348.1 568900 g19248 i0 77.2 0.96734693877551 79 18 96.7 0 9 245 68 146 CAB9517348.1 expressed unknown protein [Seminavis robusta] diamond 237 121 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;