RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1050291" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1050291 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11654682 11654682 PRJNA1050291_P_NODE_4410_length_784_cov_6.308017_g3527_i0 PRJNA1050291 4410 784 6.308017 49.45485328 Eukaryota 2759 Plants Plants 281 1.76e-92   NR XP_005649875.1 574566 g3527 i0 62.3 16.9630102040816 220 78 84.2 1 727 68 1 215 XP_005649875.1 60S ribosomal protein L10a [Coccomyxa subellipsoidea C-169] diamond 13299 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
20577352 20577352 PRJNA1050291_P_NODE_9637_length_397_cov_1748.858025_g8746_i0 PRJNA1050291 9637 397 1748.858025 6942.96635925 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.038   NTclustered gi|124484346|dbj|AB267738.1| 3055 g8746 i0 100 0.0705289672544081 28 0 7 0 193 220 48 21 Chlamydomonas reinhardtii EZY11 mRNA for UDP-glucose protein: protein trans glycosylase, complete cds blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23128358 23128358 PRJNA1050291_P_NODE_22219_length_227_cov_2.318182_g21328_i0 PRJNA1050291 22219 227 2.318182 5.26227314 Volvox carteri 3067 Plants Plants 60.2 1.21e-4   NTclustered gi|302836090|ref|XM_002949560.1| 3068 g21328 i0 97.143 8.3215859030837 35 1 15 0 136 170 152 186 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_90013), partial mRNA blastn 1889 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;