contig_metadata
13 rows where bioproject = "PRJNA1050291" and tax_clade = "Sar"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1450633 | 1450633 | PRJNA1050291_P_NODE_18222_length_252_cov_9.033520_g17331_i0 | PRJNA1050291 | 18222 | 252 | 9.03352 | 22.7644704 | Tetrahymena chironomi | 3034767 | SAR_Eukaryotes | SAR_Eukaryotes | 368 | 2e-97 | NTclustered | gi|2459327221|gb|OQ626840.1| | 3034767 | g17331 | i0 | 96.429 | 83.6825396825397 | 224 | 7 | 88 | 1 | 30 | 252 | 602 | 825 | Tetrahymena chironomi isolate LLH20220320 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence | blastn | 21088 | 368 | 1 | Eukaryota | Sar | Ciliophora | Oligohymenophorea | Hymenostomatida | Tetrahymenidae | Tetrahymena | Tetrahymena chironomi | ||
| 7828508 | 7828508 | PRJNA1050291_P_NODE_14347_length_293_cov_2.322727_g13456_i0 | PRJNA1050291 | 14347 | 293 | 2.322727 | 6.80559011 | Cutleria multifida | 74475 | SAR_Eukaryotes | SAR_Eukaryotes | 52.8 | 0.027 | NTclustered | gi|2666682981|ref|NC_085327.1| | 74475 | g13456 | i0 | 100 | 0.0955631399317406 | 28 | 0 | 10 | 0 | 141 | 168 | 32742 | 32769 | Cutleria multifida mitochondrion, complete genome | blastn | 28 | 52.8 | 1 | Eukaryota | Sar | Phaeophyceae | Cutleriales | Cutleriaceae | Cutleria | Cutleria multifida | |||
| 7828553 | 7828553 | PRJNA1050291_P_NODE_16667_length_266_cov_4.233161_g15776_i0 | PRJNA1050291 | 16667 | 266 | 4.233161 | 11.26020826 | Kyaroikeus paracetarius | 2684852 | SAR_Eukaryotes | SAR_Eukaryotes | 228 | 3.7699999999999985e-55 | NTclustered | gi|1784308422|gb|MN830170.1| | 2684852 | g15776 | i0 | 83.74 | 59.1428571428571 | 246 | 34 | 91 | 6 | 23 | 265 | 68 | 310 | Kyaroikeus paracetarius isolate LJ-I-20170502 large subunit ribosomal RNA gene, partial sequence | blastn | 15732 | 228 | 1 | Eukaryota | Sar | Ciliophora | Phyllopharyngea | Dysteriida | Kyaroikeidae | Kyaroikeus | Kyaroikeus paracetarius | ||
| 12489875 | 12489875 | PRJNA1050291_P_NODE_14010_length_298_cov_4.173333_g13119_i0 | PRJNA1050291 | 14010 | 298 | 4.173333 | 12.43653234 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 54.7 | 0.008 | NTclustered | gi|1843569114|ref|XM_034564184.1| | 5823 | g13119 | i0 | 100 | 9.46979865771812 | 29 | 0 | 10 | 0 | 110 | 138 | 3461 | 3433 | Plasmodium berghei ANKA importin-7, putative (PBANKA_0803600), partial mRNA | blastn | 2822 | 54.7 | 1 | Eukaryota | Sar | Apicomplexa | Aconoidasida | Haemosporida | Plasmodiidae | Plasmodium | Plasmodium berghei | ||
| 15038738 | 15038738 | PRJNA1050291_P_NODE_22252_length_226_cov_31.150327_g21361_i0 | PRJNA1050291 | 22252 | 226 | 31.150327 | 70.39973902 | root | 1 | Root_unresolved | Root_unresolved | 353 | 4.92e-93 | NTclustered | gi|10832|emb|X54512.1| | 5911 | g21361 | i0 | 98.039 | 80.3938053097345 | 204 | 2 | 89 | 2 | 1 | 202 | 8320 | 8117 | T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA | blastn | 18169 | 353 | 1 | Eukaryota | Sar | Ciliophora | Oligohymenophorea | Hymenostomatida | Tetrahymenidae | Tetrahymena | Tetrahymena thermophila | ||
| 18862615 | 18862615 | PRJNA1050291_P_NODE_20355_length_244_cov_3.842105_g19464_i0 | PRJNA1050291 | 20355 | 244 | 3.842105 | 9.3747362 | Fragilaria | 33644 | SAR_Eukaryotes | SAR_Eukaryotes | 412 | 8.759999999999998e-111 | NTclustered | gi|18698483|gb|AF417684.1| | 185980 | g19464 | i0 | 99.127 | 82.5983606557377 | 229 | 2 | 94 | 0 | 16 | 244 | 66 | 294 | Fragilaria capucina strain M1767 large subunit ribosomal RNA gene, partial sequence | blastn | 20154 | 412 | 1 | Eukaryota | Sar | Bacillariophyta | Fragilariophyceae | Fragilariales | Fragilariaceae | Fragilaria | Fragilaria capucina | ||
| 20137477 | 20137477 | PRJNA1050291_P_NODE_22336_length_222_cov_7.671141_g21445_i0 | PRJNA1050291 | 22336 | 222 | 7.671141 | 17.02993302 | Chilodonella | 151076 | SAR_Eukaryotes | SAR_Eukaryotes | 235 | 1.8199999999999997e-57 | NTclustered | gi|1389430804|gb|MH341632.1| | 1654720 | g21445 | i0 | 94.194 | 2.09459459459459 | 155 | 8 | 69 | 1 | 2 | 155 | 2928 | 3082 | Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence | blastn | 465 | 235 | 1 | Eukaryota | Sar | Ciliophora | Phyllopharyngea | Chlamydodontida | Chilodonellidae | Chilodonella | Chilodonella piscicola | ||
| 21852913 | 21852913 | PRJNA1050291_P_NODE_21458_length_238_cov_2.084848_g20567_i0 | PRJNA1050291 | 21458 | 238 | 2.084848 | 4.96193824 | Kentrophoros sp. 1 BS-2022 | 2930470 | SAR_Eukaryotes | SAR_Eukaryotes | 52.8 | 0.021 | NTclustered | gi|2261268989|emb|OX095830.1| | 2930470 | g20567 | i0 | 100 | 0.117647058823529 | 28 | 0 | 12 | 0 | 1 | 28 | 11 | 38 | Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) | blastn | 28 | 52.8 | 1 | Eukaryota | Sar | Ciliophora | Karyorelictea | Protostomatida | Kentrophoridae | Kentrophoros | Kentrophoros sp. 1 BS-2022 | ||
| 24402050 | 24402050 | PRJNA1050291_P_NODE_22660_length_208_cov_4.148148_g21769_i0 | PRJNA1050291 | 22660 | 208 | 4.148148 | 8.62814784 | Paraphysomonas sp. | 1955561 | SAR_Eukaryotes | SAR_Eukaryotes | 366 | 5.73e-97 | NTclustered | gi|1209182907|gb|KX100649.1| | 1955561 | g21769 | i0 | 98.558 | 99.3173076923077 | 208 | 2 | 100 | 1 | 1 | 208 | 207 | 1 | Paraphysomonas sp. strain 9-20-F1 28S ribosomal RNA gene, partial sequence | blastn | 20658 | 366 | 1 | Eukaryota | Sar | Chrysophyceae | Chromulinales | Paraphysomonadaceae | Paraphysomonas | Paraphysomonas sp. | |||
| 25237318 | 25237318 | PRJNA1050291_P_NODE_17500_length_258_cov_4.600000_g16609_i0 | PRJNA1050291 | 17500 | 258 | 4.6 | 11.868 | Navicula | 50949 | SAR_Eukaryotes | SAR_Eukaryotes | 438 | 1.5399999999999995e-118 | NTclustered | gi|18698478|gb|AF417679.1| | 186032 | g16609 | i0 | 99.177 | 94.4573643410853 | 243 | 2 | 94 | 0 | 2 | 244 | 326 | 84 | Navicula cf. erifuga strain Navicula large subunit ribosomal RNA gene, partial sequence | blastn | 24370 | 438 | 1 | Eukaryota | Sar | Bacillariophyta | Bacillariophyceae | Naviculales | Naviculaceae | Navicula | Navicula cf. erifuga | ||
| 27098488 | 27098488 | PRJNA1050291_P_NODE_8862_length_425_cov_2.849432_g7971_i0 | PRJNA1050291 | 8862 | 425 | 2.849432 | 12.110086 | Lagenidium giganteum | 4803 | SAR_Eukaryotes | SAR_Eukaryotes | 55.1 | 1.13e-5 | NR | DBA00029.1 | 4803 | g7971 | i0 | 34.8 | 1.09411764705882 | 112 | 72 | 78.4 | 1 | 8 | 340 | 246 | 357 | DBA00029.1 TPA: hypothetical protein N0F65_002032 [Lagenidium giganteum] | diamond | 465 | 55.1 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Pythiales | Pythiaceae | Lagenidium | Lagenidium giganteum | ||
| 30351842 | 30351842 | PRJNA1050291_P_NODE_5692_length_621_cov_2.582117_g4802_i0 | PRJNA1050291 | 5692 | 621 | 2.582117 | 16.03494657 | Babesia microti strain RI | 1133968 | SAR_Eukaryotes | SAR_Eukaryotes | 68.2 | 1.82e-9 | NR | XP_012647821.1 | 1133968 | g4802 | i0 | 37.1 | 0.468599033816425 | 97 | 55 | 45.4 | 2 | 269 | 550 | 81 | 174 | XP_012647821.1 Mitochondrial ribosomal death-associated protein 3 [Babesia microti strain RI] | diamond | 291 | 68.2 | 1 | Eukaryota | Sar | Apicomplexa | Aconoidasida | Piroplasmida | Babesiidae | Babesia | Babesia microti | ||
| 32374963 | 32374963 | PRJNA1050291_P_NODE_20139_length_245_cov_1.732558_g19248_i0 | PRJNA1050291 | 20139 | 245 | 1.732558 | 4.2447671 | Seminavis robusta | 568900 | SAR_Eukaryotes | SAR_Eukaryotes | 121 | 3.73e-33 | NR | CAB9517348.1 | 568900 | g19248 | i0 | 77.2 | 0.96734693877551 | 79 | 18 | 96.7 | 0 | 9 | 245 | 68 | 146 | CAB9517348.1 expressed unknown protein [Seminavis robusta] | diamond | 237 | 121 | 1 | Eukaryota | Sar | Bacillariophyta | Bacillariophyceae | Naviculales | Naviculaceae | Seminavis | Seminavis robusta |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;