contig_metadata
14 rows where bioproject = "PRJNA1050291" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2726566 | 2726566 | PRJNA1050291_P_NODE_2463_length_1693_cov_4.262963_g1690_i0 | PRJNA1050291 | 2463 | 1693 | 4.262963 | 72.17196359 | Chlamydiales bacterium | 2047757 | Bacteria | Bacteria | 546 | 1.5299999999999998e-185 | NR | HEV7738334.1 | 2047757 | g1690 | i0 | 53.6 | 0.898405197873597 | 507 | 227 | 89 | 3 | 5 | 1510 | 7 | 510 | HEV7738334.1 transposase [Chlamydiales bacterium] | diamond | 1521 | 546 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Chlamydiales | Chlamydiales bacterium | |||
| 7828647 | 7828647 | PRJNA1050291_P_NODE_21947_length_231_cov_2.189873_g21056_i0 | PRJNA1050291 | 21947 | 231 | 2.189873 | 5.05860663 | Parachlamydia acanthamoebae | 83552 | Bacteria | Bacteria | 427 | 2.9399999999999998e-115 | NTclustered | gi|336478352|emb|FR872580.1| | 765952 | g21056 | i0 | 100 | 1 | 231 | 0 | 100 | 0 | 1 | 231 | 1407857 | 1408087 | Parachlamydia acanthamoebae UV-7, complete genome | blastn | 231 | 427 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydia | Parachlamydia acanthamoebae | |
| 9103483 | 9103483 | PRJNA1050291_P_NODE_13988_length_299_cov_1.623894_g13097_i0 | PRJNA1050291 | 13988 | 299 | 1.623894 | 4.85544306 | Mucisphaera calidilacus | 2527982 | Bacteria | Bacteria | 52.8 | 0.028 | NTclustered | gi|1712644202|gb|CP036280.1| | 2527982 | g13097 | i0 | 100 | 0.0936454849498328 | 28 | 0 | 9 | 0 | 49 | 76 | 1244494 | 1244467 | Mucisphaera calidilacus strain Pan265 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Mucisphaera | Mucisphaera calidilacus | |
| 10379451 | 10379451 | PRJNA1050291_P_NODE_4929_length_708_cov_4.817323_g4041_i0 | PRJNA1050291 | 4929 | 708 | 4.817323 | 34.10664684 | Parachlamydia acanthamoebae | 83552 | Bacteria | Bacteria | 1303 | 0 | NTclustered | gi|336478352|emb|FR872580.1| | 765952 | g4041 | i0 | 99.859 | 1 | 708 | 1 | 100 | 0 | 1 | 708 | 137283 | 137990 | Parachlamydia acanthamoebae UV-7, complete genome | blastn | 708 | 1303 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydia | Parachlamydia acanthamoebae | |
| 12490012 | 12490012 | PRJNA1050291_P_NODE_8830_length_426_cov_5.158640_g7939_i0 | PRJNA1050291 | 8830 | 426 | 5.15864 | 21.9758064 | Parachlamydia | 83551 | Bacteria | Bacteria | 787 | 0 | NTclustered | gi|589811296|dbj|AB812094.1| | 83552 | g7939 | i0 | 100 | 113.800469483568 | 426 | 0 | 100 | 0 | 1 | 426 | 551 | 126 | Parachlamydia acanthamoebae gene for 16S ribosomal RNA, partial sequence, strain: Leol | blastn | 48479 | 787 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydia | Parachlamydia acanthamoebae | |
| 16752905 | 16752905 | PRJNA1050291_P_NODE_17914_length_254_cov_2.121547_g17023_i0 | PRJNA1050291 | 17914 | 254 | 2.121547 | 5.38872938 | Parachlamydia acanthamoebae | 83552 | Bacteria | Bacteria | 270 | 5.8499999999999984e-68 | NTclustered | gi|336478352|emb|FR872580.1| | 765952 | g17023 | i0 | 99.329 | 1.02362204724409 | 149 | 1 | 100 | 0 | 106 | 254 | 2118128 | 2117980 | Parachlamydia acanthamoebae UV-7, complete genome | blastn | 260 | 270 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydia | Parachlamydia acanthamoebae | |
| 19301553 | 19301553 | PRJNA1050291_P_NODE_10596_length_368_cov_2.410169_g9705_i0 | PRJNA1050291 | 10596 | 368 | 2.410169 | 8.86942192 | Parachlamydia acanthamoebae | 83552 | Bacteria | Bacteria | 680 | 0 | NTclustered | gi|336478352|emb|FR872580.1| | 765952 | g9705 | i0 | 100 | 1 | 368 | 0 | 100 | 0 | 1 | 368 | 2513245 | 2512878 | Parachlamydia acanthamoebae UV-7, complete genome | blastn | 368 | 680 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydia | Parachlamydia acanthamoebae | |
| 20577208 | 20577208 | PRJNA1050291_P_NODE_4937_length_707_cov_6.397476_g4049_i0 | PRJNA1050291 | 4937 | 707 | 6.397476 | 45.23015532 | Parachlamydia acanthamoebae | 83552 | Bacteria | Bacteria | 1306 | 0 | NTclustered | gi|336478352|emb|FR872580.1| | 765952 | g4049 | i0 | 100 | 1.3041018387553 | 707 | 0 | 100 | 0 | 1 | 707 | 2517991 | 2518697 | Parachlamydia acanthamoebae UV-7, complete genome | blastn | 922 | 1306 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydia | Parachlamydia acanthamoebae | |
| 26615510 | 26615510 | PRJNA1050291_P_NODE_14921_length_286_cov_1.352113_g14030_i0 | PRJNA1050291 | 14921 | 286 | 1.352113 | 3.86704318 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 68.2 | 6.99e-11 | NR | HEV3203136.1 | 2052164 | g14030 | i0 | 52.5 | 1.52097902097902 | 59 | 28 | 61.9 | 0 | 180 | 4 | 108 | 166 | HEV3203136.1 class I SAM-dependent methyltransferase [Gemmataceae bacterium] | diamond | 435 | 68.6 | 0.994169096209913 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmataceae bacterium | ||
| 27951403 | 27951403 | PRJNA1050291_P_NODE_19645_length_247_cov_0.896552_g18754_i0 | PRJNA1050291 | 19645 | 247 | 0.896552 | 2.21448344 | Haloferula sargassicola | 490096 | Bacteria | Bacteria | 61.6 | 7.6e-9 | NR | WP_353566207.1 | 490096 | g18754 | i0 | 45.6 | 1.93117408906883 | 79 | 43 | 96 | 0 | 8 | 244 | 20 | 98 | WP_353566207.1 hypothetical protein [Haloferula sargassicola] | diamond | 477 | 61.6 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Haloferula | Haloferula sargassicola | |
| 28961942 | 28961942 | PRJNA1050291_P_NODE_13288_length_310_cov_6.130802_g12397_i0 | PRJNA1050291 | 13288 | 310 | 6.130802 | 19.0054862 | Pirellulales bacterium | 2715253 | Bacteria | Bacteria | 45.4 | 0.00912 | NR | MBN2290920.1 | 2715253 | g12397 | i0 | 59.1 | 0.425806451612903 | 44 | 18 | 42.6 | 0 | 134 | 3 | 451 | 494 | MBN2290920.1 hypothetical protein [Pirellulales bacterium] | diamond | 132 | 45.4 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulales bacterium | |||
| 29655898 | 29655898 | PRJNA1050291_P_NODE_10890_length_361_cov_0.885417_g9999_i0 | PRJNA1050291 | 10890 | 361 | 0.885417 | 3.19635537 | Candidatus Didemnitutus sp. | 2814259 | Bacteria | Bacteria | 189 | 1.31e-57 | NR | HVU15522.1 | 2814259 | g9999 | i0 | 77.5 | 1.98614958448753 | 120 | 27 | 99.7 | 0 | 361 | 2 | 144 | 263 | HVU15522.1 hypothetical protein [Candidatus Didemnitutus sp.] | diamond | 717 | 189 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Candidatus Didemnitutus | Candidatus Didemnitutus sp. | |
| 30185101 | 30185101 | PRJNA1050291_P_NODE_14092_length_297_cov_2.075893_g13201_i0 | PRJNA1050291 | 14092 | 297 | 2.075893 | 6.16540221 | Bacteria | 2 | Bacteria | Bacteria | 67 | 4.25e-11 | NR | MFA5251620.1 | 2026778 | g13201 | i0 | 44.3 | 1.94949494949495 | 97 | 51 | 98 | 2 | 292 | 2 | 86 | 179 | MFA5251620.1 AP2 domain-containing protein [Phycisphaerae bacterium] | diamond | 579 | 67 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerae bacterium | ||||
| 31995171 | 31995171 | PRJNA1050291_P_NODE_18978_length_250_cov_0.881356_g18087_i0 | PRJNA1050291 | 18978 | 250 | 0.881356 | 2.20339 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 63.5 | 1.87e-9 | NR | MCH7988511.1 | 2026780 | g18087 | i0 | 35.4 | 0.984 | 82 | 53 | 98.4 | 0 | 248 | 3 | 152 | 233 | MCH7988511.1 hypothetical protein [Planctomycetota bacterium] | diamond | 246 | 63.5 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;