RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1047749" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047749 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15478167 15478167 PRJNA1047749_P_NODE_49833_length_209_cov_5.779412_g49566_i0 PRJNA1047749 49833 209 5.779412 12.07897108 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 52.8 0.018   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g49566 i0 100 0.133971291866029 28 0 13 0 153 180 2095683 2095710 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
30793516 30793516 PRJNA1047749_P_NODE_41234_length_246_cov_5.930636_g40967_i0 PRJNA1047749 41234 246 5.930636 14.58936456 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 78.2 8.27e-15   NR MDX1419579.1 2838334 g40967 i0 46.9 1.19512195121951 98 35 98.8 2 2 244 213 310 MDX1419579.1 hypothetical protein [Rubricoccaceae bacterium] diamond 294 78.2 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;