RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1047749" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047749 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15038151 15038151 PRJNA1047749_P_NODE_42592_length_243_cov_1.605882_g42325_i0 PRJNA1047749 42592 243 1.605882 3.90229326 Mesomycoplasma 2923352 Bacteria Bacteria 427 3.11e-115   NTclustered gi|1720621726|gb|CP035041.1| 2100 g42325 i0 100 15.2098765432099 231 0 95 0 1 231 792101 791871 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 3696 427 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
18027061 18027061 PRJNA1047749_P_NODE_42075_length_244_cov_3.619883_g41808_i0 PRJNA1047749 42075 244 3.619883 8.83251452 Acholeplasma oculi 35623 Bacteria Bacteria 448 2.4e-121   NTclustered gi|644983578|emb|LK028559.1| 35623 g41808 i0 100 0.991803278688525 242 0 99 0 1 242 692856 692615 Acholeplasma oculi genome assembly Acholeplasma oculi strain 19L ,chromosome : 1 blastn 242 448 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma oculi
26749977 26749977 PRJNA1047749_P_NODE_31021_length_283_cov_3.019048_g30754_i0 PRJNA1047749 31021 283 3.019048 8.54390584 Mycoplasmopsis arginini 2094 Bacteria Bacteria 45.1 0.00716   NR MDI3350304.1 2094 g30754 i0 72 0.530035335689046 25 7 26.5 0 102 28 1 25 MDI3350304.1 hypothetical protein [Mycoplasmopsis arginini] diamond 150 45.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
29530076 29530076 PRJNA1047749_P_NODE_45190_length_234_cov_2.434783_g44923_i0 PRJNA1047749 45190 234 2.434783 5.69739222 Mycoplasmopsis arginini 2094 Bacteria Bacteria 43.9 0.00633   NR MDI3352183.1 2094 g44923 i0 75 0.615384615384615 24 6 30.8 0 212 141 8 31 MDI3352183.1 hypothetical protein [Mycoplasmopsis arginini] diamond 144 43.9 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;