RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1047749", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1047749 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27951380 27951380 PRJNA1047749_P_NODE_35305_length_266_cov_1.538860_g35038_i0 PRJNA1047749 35305 266 1.53886 4.0933676 Heterodera schachtii 97005 Nematoda Nematoda 43.1 0.0372   NR KAL3089249.1 97005 g35038 i0 28.2 0.958646616541353 85 49 82.3 4 12 230 246 330 KAL3089249.1 hypothetical protein niasHS_006970 [Heterodera schachtii] diamond 255 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera schachtii
29940701 29940701 PRJNA1047749_P_NODE_39251_length_252_cov_0.871508_g38984_i0 PRJNA1047749 39251 252 0.871508 2.19620016 Trichuris suis 68888 Nematoda Nematoda 49.3 1.98e-4   NR KHJ42752.1 68888 g38984 i0 51.5 0.392857142857143 33 16 39.3 0 251 153 325 357 KHJ42752.1 von Willebrand factor type C domain protein [Trichuris suis] diamond 99 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;