RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1047749", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1047749 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9103028 9103028 PRJNA1047749_P_NODE_51768_length_198_cov_6.056000_g51501_i0 PRJNA1047749 51768 198 6.056 11.99088 Helix pomatia 6536 Mollusca Mollusca 111 2.79e-20   NTclustered gi|224830240|gb|FJ755002.1| 6536 g51501 i0 95.652 0.348484848484849 69 3 35 0 101 169 5455 5387 Helix pomatia Cd-specific metallothionein gene, complete cds blastn 69 111 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Helicidae Helix Helix pomatia
16312597 16312597 PRJNA1047749_P_NODE_25553_length_300_cov_4.154185_g25286_i0 PRJNA1047749 25553 300 4.154185 12.462555 Metazoa 33208 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912985489|dbj|AP039590.1| 145626 g25286 i0 92.5 10.2833333333333 40 1 13 2 253 290 25880739 25880778 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 9, sequence blastn 3085 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
20576151 20576151 PRJNA1047749_P_NODE_29377_length_290_cov_2.188940_g29110_i0 PRJNA1047749 29377 290 2.18894 6.347926 Bradybaena similaris 145626 Mollusca Mollusca 58.4 5.77e-4   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g29110 i0 94.737 8.58275862068965 38 1 13 1 129 166 32534851 32534887 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 2489 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;