RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1047749", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1047749 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27667314 27667314 PRJNA1047749_P_NODE_25224_length_300_cov_7.079295_g24957_i0 PRJNA1047749 25224 300 7.079295 21.237885 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 82.8 8.75e-17   NR NJK51134.1 2044595 g24957 i0 80 2.11 60 6 60 1 119 298 2 55 NJK51134.1 SDR family oxidoreductase [Candidatus Altimarinota bacterium] diamond 633 82.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28353661 28353661 PRJNA1047749_P_NODE_40186_length_249_cov_3.301136_g39919_i0 PRJNA1047749 40186 249 3.301136 8.21982864 Bacteria 2 Bacteria Bacteria 114 2.6e-27   NR NJK48281.1 2044595 g39919 i0 66.3 6.73493975903614 80 27 96.4 0 1 240 210 289 NJK48281.1 DUF3352 domain-containing protein [Candidatus Altimarinota bacterium] diamond 1677 114 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29624227 29624227 PRJNA1047749_P_NODE_34230_length_270_cov_2.588832_g33963_i0 PRJNA1047749 34230 270 2.588832 6.9898464 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 79.7 2.6e-15   NR NJM08077.1 2044595 g33963 i0 52.4 0.933333333333333 84 40 93.3 0 257 6 165 248 NJM08077.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 252 79.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;