RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1047749" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1047749 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14203934 14203934 PRJNA1047749_P_NODE_39072_length_252_cov_3.435754_g38805_i0 PRJNA1047749 39072 252 3.435754 8.65810008 Didymium iridis 5793 Evosea other_Eukaryota 324 4.39e-84   NTclustered gi|2687|emb|X60210.1| 5793 g38805 i0 91.286 31.0873015873016 241 16 95 4 12 251 5001 5237 D.iridis LSU rRNA gene blastn 7834 324 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
23127406 23127406 PRJNA1047749_P_NODE_32059_length_279_cov_1.432039_g31792_i0 PRJNA1047749 32059 279 1.432039 3.99538881 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 3.69e-27   NR KAF2068976.1 133409 g31792 i0 73.1 5.74193548387097 67 18 72 0 203 3 481 547 KAF2068976.1 hypothetical protein CYY_009708 [Polysphondylium violaceum] diamond 1602 115 0.991304347826087 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
26908717 26908717 PRJNA1047749_P_NODE_16722_length_312_cov_5.673640_g16455_i0 PRJNA1047749 16722 312 5.67364 17.7017568 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 77 3.19e-14   NR XP_004344132.1 1257118 g16455 i0 67.3 0.471153846153846 49 16 47.1 0 164 310 186 234 XP_004344132.1 Olinked GlcNAc transferase-like protein [Acanthamoeba castellanii str. Neff] diamond 147 77 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28045991 28045991 PRJNA1047749_P_NODE_32665_length_276_cov_3.591133_g32398_i0 PRJNA1047749 32665 276 3.591133 9.91152708 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.5 6.99e-21   NR XP_004338431.1 1257118 g32398 i0 57.6 0.923913043478261 85 30 92.4 1 257 3 1 79 XP_004338431.1 uncharacterized protein ACA1_320820 [Acanthamoeba castellanii str. Neff] diamond 255 90.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28298538 28298538 PRJNA1047749_P_NODE_25406_length_300_cov_5.013216_g25139_i0 PRJNA1047749 25406 300 5.013216 15.039648 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 148 1.81e-41   NR XP_004341291.1 1257118 g25139 i0 73.1 1.04 104 18 94 1 19 300 20 123 XP_004341291.1 transaldolase [Acanthamoeba castellanii str. Neff] diamond 312 148 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28330129 28330129 PRJNA1047749_P_NODE_46046_length_231_cov_2.151899_g45779_i0 PRJNA1047749 46046 231 2.151899 4.97088669 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 92 7.08e-20   NR XP_004334282.1 1257118 g45779 i0 63.5 1.63636363636364 63 23 81.8 0 193 5 82 144 XP_004334282.1 lipase A precursor family protein [Acanthamoeba castellanii str. Neff] diamond 378 92 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31520773 31520773 PRJNA1047749_P_NODE_26296_length_299_cov_3.716814_g26029_i0 PRJNA1047749 26296 299 3.716814 11.11327386 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 105 5.6999999999999995e-25   NR XP_004344767.1 1257118 g26029 i0 45.4 1.08361204013378 108 47 96.3 1 293 6 156 263 XP_004344767.1 coenzyme Q9, putative [Acanthamoeba castellanii str. Neff] diamond 324 105 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;