RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1047551", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047551 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6552433 6552433 PRJNA1047551_S_NODE_10386_length_165_cov_6.415385_g10259_i0 PRJNA1047551 10386 165 6.415385 10.58538525 Crogonang virus 9 3062921 Viruses Viruses 134 4.7900000000000005e-27   NTclustered gi|2836327217|gb|PQ161481.1| 3062921 g10259 i0 97.436 1.78181818181818 78 2 47 0 18 95 9031 9108 MAG: Crogonang virus 9 isolate CS13 RNA-dependent RNA polymerase and capsid protein genes, complete cds blastn 294 134 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Crogonang virus 9
28488136 28488136 PRJNA1047551_S_NODE_4867_length_218_cov_2.316940_g4740_i0 PRJNA1047551 4867 218 2.3169400000000002 5.0509292 Sophora japonica powdery mildew-associated partitivirus 1891704 Viruses Viruses 61.2 7.97e-9   NR YP_009272945.1 1891704 g4740 i0 78.4 0.509174311926605 37 8 50.9 0 217 107 491 527 YP_009272945.1 putative coat protein [Sophora japonica powdery mildew-associated partitivirus] diamond 111 61.2 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae   Sophora japonica powdery mildew-associated partitivirus
32564932 32564932 PRJNA1047551_S_NODE_9459_length_171_cov_2.132353_g9332_i0 PRJNA1047551 9459 171 2.132353 3.64632363 Grapevine alphapartitivirus 3113821 Viruses Viruses 80.9 4.77e-16   NR WRQ19776.1 3113821 g9332 i0 68.5 0.947368421052632 54 17 94.7 0 8 169 383 436 WRQ19776.1 MAG: coat protein [Grapevine alphapartitivirus] diamond 162 80.9 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae Alphapartitivirus Grapevine alphapartitivirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;