RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1047551" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1047551 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4837911 4837911 PRJNA1047551_S_NODE_8164_length_181_cov_1.178082_g8037_i0 PRJNA1047551 8164 181 1.178082 2.13232842 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 122 1.16e-23   NTclustered gi|23394349|gb|AF424640.1| 4787 g8037 i0 91.111 32.3204419889503 90 8 50 0 92 181 734 645 Phytophthora infestans clone MY-01-D-08 14-3-3-like protein mRNA, complete cds blastn 5850 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
14203412 14203412 PRJNA1047551_S_NODE_7712_length_184_cov_1.731544_g7585_i0 PRJNA1047551 7712 184 1.731544 3.18604096 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 111 1.65e-27   NR RHY32007.1 157072 g7585 i0 82 2.98369565217391 61 11 99.5 0 2 184 313 373 RHY32007.1 hypothetical protein DYB32_002977 [Aphanomyces invadans] diamond 549 111 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
19300232 19300232 PRJNA1047551_S_NODE_10016_length_168_cov_1.323308_g9889_i0 PRJNA1047551 10016 168 1.323308 2.22315744 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 250 4.66e-62   NTclustered gi|2794733310|ref|XM_067963730.1| 4779 g9889 i0 93.452 2 168 11 100 0 1 168 3184 3017 Bremia lactucae uncharacterized protein (CCR75_005652), mRNA blastn 336 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
20575675 20575675 PRJNA1047551_S_NODE_3337_length_255_cov_1.650000_g3210_i0 PRJNA1047551 3337 255 1.65 4.2075 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 466 6.98e-127   NTclustered gi|325193589|emb|FR824715.1| 890382 g3210 i0 99.608 43.043137254902 255 1 100 0 1 255 1189 1443 Albugo laibachii Nc14, genomic contig CONTIG_781_NC14_v4_6138_160 blastn 10976 466 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
27785569 27785569 PRJNA1047551_S_NODE_7204_length_189_cov_1.110390_g7077_i0 PRJNA1047551 7204 189 1.11039 2.0986371 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 59.3 2.63e-8   NR XP_067814741.1 4779 g7077 i0 50 14.3015873015873 56 23 88.9 1 174 7 419 469 XP_067814741.1 uncharacterized protein CCR75_006060 [Bremia lactucae] diamond 2703 59.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
30943610 30943610 PRJNA1047551_S_NODE_2174_length_306_cov_4.848708_g2047_i0 PRJNA1047551 2174 306 4.848708 14.83704648 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 68.9 1.46e-12   NR KAF0750018.1 112090 g2047 i0 66.7 1.76470588235294 45 15 44.1 0 301 167 65 109 KAF0750018.1 hypothetical protein AaE_006855, partial [Aphanomyces astaci] diamond 540 69.3 0.994227994227994 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;