RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1047551" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1047551 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6112980 6112980 PRJNA1047551_S_NODE_4185_length_231_cov_3.887755_g4058_i0 PRJNA1047551 4185 231 3.887755 8.98071405 Metazoa 33208 Mollusca Mollusca 54.7 0.006   NTclustered gi|2194131699|ref|XM_046721879.1| 36100 g4058 i0 100 8.72727272727273 29 0 13 0 187 215 466 438 PREDICTED: Haliotis rubra 60S acidic ribosomal protein P1-like (LOC124285616), mRNA blastn 2016 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rubra
6552631 6552631 PRJNA1047551_S_NODE_5826_length_204_cov_3.189349_g5699_i0 PRJNA1047551 5826 204 3.189349 6.50627196 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.001   NTclustered gi|2912999747|dbj|AP039606.1| 145626 g5699 i0 96.97 0.161764705882353 33 1 16 0 119 151 54666226 54666258 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 25, sequence blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
12928286 12928286 PRJNA1047551_S_NODE_2471_length_289_cov_5.287402_g2344_i0 PRJNA1047551 2471 289 5.287402 15.28059178 Pecten maximus 6579 Mollusca Mollusca 71.3 7.38e-8   NTclustered gi|1835452351|ref|XM_033891464.1| 6579 g2344 i0 89.286 0.567474048442907 56 6 19 0 1 56 344 399 PREDICTED: Pecten maximus dynein light chain 2, cytoplasmic-like (LOC117332522), mRNA blastn 164 71.3 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus
21411862 21411862 PRJNA1047551_S_NODE_2217_length_303_cov_3.261194_g2090_i0 PRJNA1047551 2217 303 3.261194 9.88141782 Metazoa 33208 Mollusca Mollusca 52.8 0.028   NTclustered gi|2502184947|ref|XM_056035088.1| 6526 g2090 i0 100 0.277227722772277 28 0 9 0 223 250 534 507 PREDICTED: Biomphalaria glabrata ctenidin-1-like (LOC106070527), mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
23126920 23126920 PRJNA1047551_S_NODE_4679_length_221_cov_2.860215_g4552_i0 PRJNA1047551 4679 221 2.860215 6.32107515 Lottia gigantea 225164 Mollusca Mollusca 113 8.860000000000001e-21   NTclustered gi|676472385|ref|XM_009061227.1| 225164 g4552 i0 84.821 35.4841628959276 112 17 51 0 95 206 1370 1259 Lottia gigantea hypothetical protein mRNA blastn 7842 113 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea
25236147 25236147 PRJNA1047551_S_NODE_1660_length_344_cov_10.695793_g1533_i0 PRJNA1047551 1660 344 10.695793 36.79352792 Bivalvia 6544 Mollusca Mollusca 89.8 2.48e-13   NTclustered gi|2334727284|ref|XM_052249129.1| 6549 g1533 i0 87.342 3.36046511627907 79 9 23 1 21 98 1353 1431 PREDICTED: Mytilus californianus tubulin beta-4B chain-like (LOC127738048), mRNA blastn 1156 89.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
31417614 31417614 PRJNA1047551_S_NODE_9296_length_172_cov_2.379562_g9169_i0 PRJNA1047551 9296 172 2.379562 4.09284664 Metazoa 33208 Mollusca Mollusca 79.3 2.17e-16   NR XP_045192477.2 6596 g9169 i0 75.4 17.843023255814 57 14 99.4 0 172 2 73 129 XP_045192477.2 60S ribosomal protein L13-like [Mercenaria mercenaria] diamond 3069 79.7 0.994981179422836 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
32335330 32335330 PRJNA1047551_S_NODE_2259_length_301_cov_3.364662_g2132_i0 PRJNA1047551 2259 301 3.364662 10.12763262 root 1 Root_unresolved Root_unresolved 48.1 9.42e-4   NR KAJ8314025.1 220873 g2132 i0 39.7 3.0797342192691 63 33 57.8 3 290 117 929 991 KAJ8314025.1 hypothetical protein KUTeg_008586 [Tegillarca granosa] diamond 927 48.5 0.991752577319588 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Tegillarca Tegillarca granosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;