RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1047551", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047551 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29750762 29750762 PRJNA1047551_S_NODE_11511_length_159_cov_2.620968_g11384_i0 PRJNA1047551 11511 159 2.620968 4.16733912 Chloroflexota bacterium 2026724 Bacteria Bacteria 58.9 7.33e-9   NR MBU6358537.1 2026724 g11384 i0 63.9 2.71698113207547 36 13 67.9 0 5 112 150 185 MBU6358537.1 peptidylprolyl isomerase [Chloroflexota bacterium] diamond 432 58.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30224791 30224791 PRJNA1047551_S_NODE_12412_length_155_cov_1.816667_g12285_i0 PRJNA1047551 12412 155 1.816667 2.81583385 Caldilineaceae bacterium 2614250 Bacteria Bacteria 73.2 1.88e-14   NR MCB9150722.1 2614250 g12285 i0 75.6 0.870967741935484 45 11 87.1 0 13 147 7 51 MCB9150722.1 hypothetical protein [Caldilineaceae bacterium] diamond 135 73.2 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
31299179 31299179 PRJNA1047551_S_NODE_7835_length_183_cov_1.756757_g7708_i0 PRJNA1047551 7835 183 1.756757 3.21486531 Anaerolineaceae bacterium 2024896 Bacteria Bacteria 42 0.0326   NR MEN6570425.1 2024896 g7708 i0 37.9 0.950819672131147 58 35 93.4 1 10 180 148 205 MEN6570425.1 copper-translocating P-type ATPase [Anaerolineaceae bacterium] diamond 174 42 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae   Anaerolineaceae bacterium
32753555 32753555 PRJNA1047551_S_NODE_2420_length_292_cov_7.210117_g2293_i0 PRJNA1047551 2420 292 7.210117 21.05354164 Ktedonobacteraceae bacterium 2740538 Bacteria Bacteria 45.8 0.001   NR HYU73127.1 2740538 g2293 i0 42.6 0.626712328767123 61 32 59.6 1 60 233 35 95 HYU73127.1 hypothetical protein [Ktedonobacteraceae bacterium] diamond 183 45.8 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae   Ktedonobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;