RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1047551", tax_phylum = "Aquificota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Aquificota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047551 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1009851 1009851 PRJNA1047551_S_NODE_8381_length_179_cov_1.555556_g8254_i0 PRJNA1047551 8381 179 1.555556 2.78444524 Sulfurihydrogenibium 212790 Bacteria Bacteria 322 1.05e-83   NTclustered gi|225643049|gb|CP001229.1| 204536 g8254 i0 100 100.251396648045 174 0 97 0 1 174 830079 830252 Sulfurihydrogenibium azorense Az-Fu1, complete genome blastn 17945 322 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense
15477294 15477294 PRJNA1047551_S_NODE_13633_length_150_cov_1.860870_g13506_i0 PRJNA1047551 13633 150 1.86087 2.791305 Aquificota bacterium 2202151 Bacteria Bacteria 272 8.609999999999998e-69   NTclustered gi|2049899551|gb|CP076324.1| 2202151 g13506 i0 99.333 1 150 1 100 0 1 150 1308642 1308493 MAG: Aquificota bacterium isolate RBS10-58 chromosome, complete genome blastn 150 272 1 Bacteria   Pseudomonadati Aquificota         Aquificota bacterium
20136259 20136259 PRJNA1047551_S_NODE_6436_length_197_cov_1.524691_g6309_i0 PRJNA1047551 6436 197 1.524691 3.00364127 Sulfurihydrogenibium 212790 Bacteria Bacteria 309 9.17e-80   NTclustered gi|225643049|gb|CP001229.1| 204536 g6309 i0 95.833 23.2994923857868 192 7 97 1 1 192 1003700 1003510 Sulfurihydrogenibium azorense Az-Fu1, complete genome blastn 4590 309 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense
23962293 23962293 PRJNA1047551_S_NODE_2739_length_277_cov_1.971074_g2612_i0 PRJNA1047551 2739 277 1.971074 5.45987498 Sulfurihydrogenibium 212790 Bacteria Bacteria 501 2.11e-137   NTclustered gi|225643049|gb|CP001229.1| 204536 g2612 i0 99.635 60.4151624548736 274 1 99 0 1 274 829268 828995 Sulfurihydrogenibium azorense Az-Fu1, complete genome blastn 16735 501 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;