RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1047551" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1047551 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19300349 19300349 PRJNA1047551_S_NODE_2616_length_282_cov_4.222672_g2489_i0 PRJNA1047551 2616 282 4.222672 11.90793504 Plasmodium cynomolgi 5827 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|457868465|ref|XM_004221107.1| 1120755 g2489 i0 94.444 0.127659574468085 36 2 13 0 182 217 449 414 Plasmodium cynomolgi strain B RAD protein (PCYB_052260) mRNA, complete cds blastn 36 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium cynomolgi
28764048 28764048 PRJNA1047551_S_NODE_11347_length_160_cov_1.992000_g11220_i0 PRJNA1047551 11347 160 1.992 3.1872 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 82 6.57e-19   NR EUT65858.1 478859 g11220 i0 67.9 10.9125 53 17 99.4 0 159 1 26 78 EUT65858.1 40S ribosomal protein [Plasmodium falciparum Santa Lucia] diamond 1746 82.8 0.990338164251208 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
30438195 30438195 PRJNA1047551_S_NODE_9173_length_173_cov_2.108696_g9046_i0 PRJNA1047551 9173 173 2.108696 3.64804408 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 68.2 3.95e-13   NR ETW59732.1 5835 g9046 i0 73.2 10.6300578034682 41 11 71.1 0 4 126 59 99 ETW59732.1 60S ribosomal protein L23 [Plasmodium falciparum CAMP/Malaysia] diamond 1839 68.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;