RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1047551" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047551 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27635687 27635687 PRJNA1047551_S_NODE_6724_length_194_cov_1.138365_g6597_i0 PRJNA1047551 6724 194 1.138365 2.2084281 Blastocatellia bacterium 2052146 Bacteria Bacteria 59.7 1.88e-8   NR HYP25883.1 2052146 g6597 i0 55.6 0.835051546391753 54 24 83.5 0 192 31 257 310 HYP25883.1 TerC family protein [Blastocatellia bacterium] diamond 162 59.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
32081849 32081849 PRJNA1047551_S_NODE_6278_length_199_cov_1.500000_g6151_i0 PRJNA1047551 6278 199 1.5 2.985 Bacteria 2 Bacteria Bacteria 44.3 0.00571   NR MBI3405717.1 1978231 g6151 i0 62.5 6.61809045226131 32 12 48.2 0 198 103 233 264 MBI3405717.1 AMP-binding protein [Acidobacteriota bacterium] diamond 1317 44.7 0.991051454138702 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32784919 32784919 PRJNA1047551_S_NODE_5340_length_211_cov_2.261364_g5213_i0 PRJNA1047551 5340 211 2.261364 4.77147804 Pyrinomonadaceae bacterium MAG19_C2-C3 2928749 Bacteria Bacteria 75.1 9.94e-14   NR MCP9496174.1 2928749 g5213 i0 56.5 2.85781990521327 69 30 98.1 0 5 211 988 1056 MCP9496174.1 FG-GAP-like repeat-containing protein [Pyrinomonadaceae bacterium MAG19_C2-C3] diamond 603 75.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium MAG19_C2-C3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;