RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJNA1047551", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 1 ✖

tax_kingdom 1

  • Pseudomonadati · 1 ✖

bioproject 1

  • PRJNA1047551 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24400738 24400738 PRJNA1047551_S_NODE_7040_length_190_cov_2.090323_g6913_i0 PRJNA1047551 7040 190 2.090323 3.9716137 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 102 1.6e-17   NTclustered gi|1950807334|gb|CP066680.1| 2026735 g6913 i0 84.906 9.23684210526316 106 10 54 6 81 183 309485 309383 MAG: Deltaproteobacteria bacterium isolate NC_groundwater_69_Ag_B-0.1um_32_21 chromosome blastn 1755 102 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;