RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1047551", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1047551 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17587681 17587681 PRJNA1047551_S_NODE_7234_length_188_cov_2.352941_g7107_i0 PRJNA1047551 7234 188 2.352941 4.42352908 Campylobacter 194 Bacteria Bacteria 327 2.39e-85   NTclustered gi|1622745323|gb|CP012543.1| 203 g7107 i0 99.444 221.989361702128 180 1 96 0 9 188 160022 159843 Campylobacter rectus strain ATCC 33238, complete genome blastn 41734 327 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
23962306 23962306 PRJNA1047551_S_NODE_579_length_565_cov_3.250943_g460_i0 PRJNA1047551 579 565 3.250943 18.36782795 Campylobacter 194 Bacteria Bacteria 961 0   NTclustered gi|240265854|gb|GQ167691.1| 827 g460 i0 98.355 214.442477876106 547 9 97 0 1 547 1076 1622 Bacteroides ureolyticus strain UNSWE 23S ribosomal RNA gene, partial sequence blastn 121160 961 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;