RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1047551", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1047551 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27098448 27098448 PRJNA1047551_S_NODE_9222_length_173_cov_1.449275_g9095_i0 PRJNA1047551 9222 173 1.449275 2.50724575 Bdellovibrionales bacterium RIFOXYB1_FULL_39_21 1797406 Bacteria Bacteria 53.9 5.34e-7   NR OFZ35785.1 1797406 g9095 i0 47.3 0.953757225433526 55 25 95.4 1 7 171 108 158 OFZ35785.1 MAG: hypothetical protein A2385_13140 [Bdellovibrionales bacterium RIFOXYB1_FULL_39_21] diamond 165 53.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYB1_FULL_39_21
30090240 30090240 PRJNA1047551_S_NODE_4132_length_233_cov_1.651515_g4005_i0 PRJNA1047551 4132 233 1.651515 3.84802995 Bacteria 2 Bacteria Bacteria 91.7 9.99e-22   NR QQG36186.1 349221 g4005 i0 63.9 21.206008583691 72 26 92.7 0 217 2 50 121 QQG36186.1 MAG: 30S ribosomal protein S13 [Micavibrio aeruginosavorus] diamond 4941 91.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;