RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1047551", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1047551 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26591812 26591812 PRJNA1047551_S_NODE_2581_length_284_cov_1.907631_g2454_i0 PRJNA1047551 2581 284 1.907631 5.41767204 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 181 3.2199999999999993e-52   NR PRP80716.1 1890364 g2454 i0 95.7 0.992957746478873 94 4 99.3 0 2 283 228 321 PRP80716.1 hypothetical protein PROFUN_11589 [Planoprotostelium fungivorum] diamond 282 181 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
26718321 26718321 PRJNA1047551_S_NODE_5461_length_209_cov_5.425287_g5334_i0 PRJNA1047551 5461 209 5.425287 11.33884983 Cavenderia fasciculata 261658 Evosea other_Eukaryota 50.8 4.99e-6   NR XP_004361742.1 261658 g5334 i0 44.4 0.77511961722488 54 29 76.1 1 13 171 54 107 XP_004361742.1 DUF614 family protein [Cavenderia fasciculata] diamond 162 50.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27129675 27129675 PRJNA1047551_S_NODE_6022_length_202_cov_1.311377_g5895_i0 PRJNA1047551 6022 202 1.311377 2.64898154 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 77 1.73e-14   NR XP_637351.1 352472 g5895 i0 50 0.98019801980198 66 33 98 0 3 200 542 607 XP_637351.1 vacuolar H+-ATPase A subunit [Dictyostelium discoideum AX4] diamond 198 77 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;