RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1047321" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1047321 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5277245 5277245 PRJNA1047321_P_NODE_6705_length_250_cov_0.870056_g6534_i0 PRJNA1047321 6705 250 0.870056 2.17514 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 130 8.559999999999999e-34   NR MBL7556906.1 2026715 g6534 i0 94.1 0.816 68 4 81.6 0 249 46 384 451 MBL7556906.1 thiolase family protein [Pseudobdellovibrionaceae bacterium] diamond 204 130 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
11652930 11652930 PRJNA1047321_P_NODE_1150_length_648_cov_3.987826_g988_i0 PRJNA1047321 1150 648 3.987826 25.84111248 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 231 7.71e-56   NTclustered gi|2907625691|emb|OZ223251.1| 2081706 g988 i0 73.96 199.524691358025 649 135 98 30 14 648 90929 90301 MAG: Bacteriovoracaceae bacterium isolate 56684ba0-df17-47c9-bcf5-ee076427a4fa genome assembly, chromosome: 1 blastn 129292 231 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
27129667 27129667 PRJNA1047321_P_NODE_8682_length_241_cov_0.916667_g8511_i0 PRJNA1047321 8682 241 0.916667 2.20916747 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 78.2 1.19e-14   NR MBC7458907.1 2026715 g8511 i0 50 2.78838174273859 76 38 94.6 0 241 14 364 439 MBC7458907.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 672 78.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;