RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1046144" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1046144 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27003423 27003423 PRJNA1046144_P_NODE_41562_length_267_cov_2.181818_g41267_i0 PRJNA1046144 41562 267 2.181818 5.82545406 Opitutales bacterium 2026772 Bacteria Bacteria 115 9.55e-28   NR MDD4348863.1 2026772 g41267 i0 66.3 0.932584269662921 83 28 93.3 0 14 262 637 719 MDD4348863.1 hypothetical protein [Opitutales bacterium] diamond 249 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
27762088 27762088 PRJNA1046144_P_NODE_68444_length_227_cov_0.911392_g68149_i0 PRJNA1046144 68444 227 0.911392 2.06885984 Opitutus sp. 1913982 Bacteria Bacteria 123 1.5e-30   NR MBA4136060.1 1913982 g68149 i0 87.7 1.95594713656388 73 9 96.5 0 8 226 398 470 MBA4136060.1 hypothetical protein [Opitutus sp.] diamond 444 123 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
27817106 27817106 PRJNA1046144_P_NODE_49344_length_249_cov_1.600000_g49049_i0 PRJNA1046144 49344 249 1.6 3.984 Verrucomicrobiota 74201 Bacteria Bacteria 46.2 0.0021   NR MBI3870638.1 2026799 g49049 i0 66.7 1.73493975903614 36 12 43.4 0 108 1 9 44 MBI3870638.1 WecB/TagA/CpsF family glycosyltransferase [Verrucomicrobiota bacterium] diamond 432 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28519725 28519725 PRJNA1046144_P_NODE_40427_length_270_cov_1.880597_g40132_i0 PRJNA1046144 40427 270 1.880597 5.0776119 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 63.9 1.81e-9   NR MFN0130331.1 2026801 g40132 i0 44.4 2.96666666666667 90 46 98.9 2 267 1 398 484 MFN0130331.1 ATP-binding protein [Verrucomicrobiales bacterium] diamond 801 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
29245825 29245825 PRJNA1046144_P_NODE_62889_length_230_cov_1.614907_g62594_i0 PRJNA1046144 62889 230 1.614907 3.7142861 Lacunisphaera sp. 1961806 Bacteria Bacteria 134 1.2799999999999998e-35   NR HRG56840.1 1961806 g62594 i0 93.4 0.991304347826087 76 5 99.1 0 229 2 240 315 HRG56840.1 helicase RepA family protein [Lacunisphaera sp.] diamond 228 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
32784894 32784894 PRJNA1046144_P_NODE_56260_length_235_cov_0.867470_g55965_i0 PRJNA1046144 56260 235 0.86747 2.0385545 Verrucomicrobium sp. 72225 Bacteria Bacteria 157 5.129999999999999e-47   NR MCE2828095.1 72225 g55965 i0 96.2 0.995744680851064 78 3 99.6 0 234 1 43 120 MCE2828095.1 hypothetical protein [Verrucomicrobium sp.] diamond 234 157 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;