RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1046144", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Pisuviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1046144 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6550734 6550734 PRJNA1046144_P_NODE_59686_length_233_cov_0.878049_g59391_i0 PRJNA1046144 59686 233 0.878049 2.04585417 Betacoronavirus pandemicum 3418604 Viruses Viruses 425 1.07e-114   NTclustered gi|2161743781|gb|OL761638.1| 2697049 g59391 i0 99.571 100 233 1 100 0 1 233 28707 28939 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/AZ-CDC-ASC210483568/2021, complete genome blastn 23300 425 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18024007 18024007 PRJNA1046144_P_NODE_355_length_2008_cov_3.012378_g328_i0 PRJNA1046144 355 2008 3.012378 60.48855024 Iflavirus sp. 1916690 Viruses Viruses 1147 0   NTclustered gi|2895513769|tpg|BK068505.1| 1916690 g328 i0 79.462 23.7001992031872 1636 322 81 12 319 1947 10102 11730 TPA_asm: Iflavirus sp. isolate WUR34 polyprotein gene, complete cds blastn 47590 1147 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Iflavirus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;