RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1046144" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1046144 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3559983 3559983 PRJNA1046144_P_NODE_53623_length_240_cov_1.204678_g53328_i0 PRJNA1046144 53623 240 1.204678 2.8912272 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 296 9.03e-76   NTclustered gi|399764159|gb|JQ271670.1| 1217111 g53328 i0 88.889 67.5083333333333 243 23 100 4 1 240 2837 3078 Allovahlkampfia sp. PKD 2011b strain PV66 18S ribosomal RNA gene, partial sequence blastn 16202 296 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011b
3998483 3998483 PRJNA1046144_P_NODE_23244_length_341_cov_2.117647_g22949_i0 PRJNA1046144 23244 341 2.117647 7.22117627 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 610 4.239999999999999e-170   NTclustered gi|701726755|gb|KM220721.1| 500012 g22949 i0 99.118 37.2052785923754 340 2 99 1 1 339 19 358 Allovahlkampfia sp. strain SO/1P isolate 164A 18S ribosomal RNA gene, partial sequence blastn 12687 610 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
3999025 3999025 PRJNA1046144_P_NODE_51444_length_244_cov_3.194286_g51149_i0 PRJNA1046144 51444 244 3.194286 7.79405784 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 344 3.2399999999999993e-90   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g51149 i0 92.213 3.00819672131148 244 17 100 2 1 244 3618 3859 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 734 344 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
5275261 5275261 PRJNA1046144_P_NODE_46405_length_256_cov_1.187166_g46110_i0 PRJNA1046144 46405 256 1.187166 3.03914496 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 357 4.4e-94   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g46110 i0 91.797 26.99609375 256 21 100 0 1 256 4272 4527 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6911 357 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12488332 12488332 PRJNA1046144_P_NODE_65570_length_229_cov_0.900000_g65275_i0 PRJNA1046144 65570 229 0.9 2.061 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 418 1.7499999999999995e-112   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g65275 i0 99.563 79.1091703056769 229 1 100 0 1 229 1996 1768 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 18116 418 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
16311309 16311309 PRJNA1046144_P_NODE_12973_length_444_cov_1.706667_g12678_i0 PRJNA1046144 12973 444 1.706667 7.57760148 Tetramitus 5768 Heterolobosea other_Eukaryota 815 0   NTclustered gi|1707456|emb|X93085.1| 166960 g12678 i0 99.775 75.4166666666667 444 1 100 0 1 444 1961 1518 Tetramitus thorntoni SSU rRNA gene blastn 33485 821 0.992691839220463 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus thorntoni
16311327 16311327 PRJNA1046144_P_NODE_14393_length_423_cov_2.206215_g14098_i0 PRJNA1046144 14393 423 2.206215 9.33228945 Tetramitus 5768 Heterolobosea other_Eukaryota 782 0   NTclustered gi|4469330|emb|AJ224888.1| 74084 g14098 i0 100 49.3475177304965 423 0 100 0 1 423 119 541 Vahlkampfia aberdonica SSU rRNA gene, strain CCAP 1588/4 blastn 20874 782 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus aberdonicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;