RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1046144" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1046144 · 9 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2722883 2722883 PRJNA1046144_P_NODE_4523_length_736_cov_3.223388_g4257_i0 PRJNA1046144 4523 736 3.223388 23.72413568 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 351 4.429999999999999e-110   NR MEE8596102.1 2026742 g4257 i0 80.6 0.966032608695652 237 46 96.6 0 2 712 174 410 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 711 351 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
2723492 2723492 PRJNA1046144_P_NODE_9583_length_511_cov_1.228507_g9290_i0 PRJNA1046144 9583 511 1.228507 6.27767077 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 348 3.189999999999999e-110   NR MEE8596102.1 2026742 g9290 i0 100 0.998043052837573 170 0 99.8 0 510 1 420 589 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 510 348 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
8662051 8662051 PRJNA1046144_P_NODE_11287_length_473_cov_3.101485_g10992_i0 PRJNA1046144 11287 473 3.101485 14.67002405 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 251 2.8000000000000003e-74   NR MEE8596102.1 2026742 g10992 i0 100 0.818181818181818 129 0 81.8 0 388 2 1 129 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 387 251 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
9100516 9100516 PRJNA1046144_P_NODE_7308_length_584_cov_2.858252_g7017_i0 PRJNA1046144 7308 584 2.858252 16.69219168 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 379 2.4699999999999996e-121   NR MEE8596102.1 2026742 g7017 i0 99 0.996575342465753 194 2 99.7 0 583 2 867 1060 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 582 379 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
14201228 14201228 PRJNA1046144_P_NODE_51772_length_244_cov_1.268571_g51477_i0 PRJNA1046144 51772 244 1.268571 3.09531324 Longimicrobium sp. 2029185 Bacteria Bacteria 105 4.38e-24   NR HEV3049408.1 2029185 g51477 i0 60.5 0.995901639344262 81 32 99.6 0 243 1 708 788 HEV3049408.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 243 105 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
16748761 16748761 PRJNA1046144_P_NODE_14314_length_424_cov_2.216901_g14019_i0 PRJNA1046144 14314 424 2.216901 9.39966024 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 155 7.9e-41   NR MEW5930501.1 2026742 g14019 i0 63.9 1.95990566037736 133 47 94.1 1 2 400 1538 1669 MEW5930501.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 831 155 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28709195 28709195 PRJNA1046144_P_NODE_41687_length_267_cov_1.454545_g41392_i0 PRJNA1046144 41687 267 1.454545 3.88363515 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 89.4 1.08e-19   NR HEX7241433.1 3047548 g41392 i0 52.4 0.921348314606742 82 39 92.1 0 8 253 88 169 HEX7241433.1 class I SAM-dependent methyltransferase [Longimicrobiaceae bacterium] diamond 246 89.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
28961864 28961864 PRJNA1046144_P_NODE_43448_length_263_cov_1.113402_g43153_i0 PRJNA1046144 43448 263 1.113402 2.92824726 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 79.3 6.43e-15   NR HEX7243455.1 3047548 g43153 i0 55.6 10.1863117870722 90 36 98.1 1 1 258 488 577 HEX7243455.1 amino acid adenylation domain-containing protein [Longimicrobiaceae bacterium] diamond 2679 79.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
29206388 29206388 PRJNA1046144_P_NODE_50349_length_247_cov_1.393258_g50054_i0 PRJNA1046144 50349 247 1.393258 3.44134726 Pseudomonadati 3379134 Bacteria Bacteria 87.4 7.29e-18   NR HEX8242041.1 2029185 g50054 i0 54.3 5.8663967611336 81 37 98.4 0 3 245 823 903 HEX8242041.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 1449 87.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;