RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1046144", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1046144 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
171874 171874 PRJNA1046144_P_NODE_16881_length_393_cov_4.466049_g16586_i0 PRJNA1046144 16881 393 4.466049 17.55157257 uncultured Desulfobacter sp. 240139 Bacteria Bacteria 52.8 0.038   NTclustered gi|2621700914|emb|OY759748.1| 240139 g16586 i0 100 0.0712468193384224 28 0 7 0 4 31 2018910 2018937 MAG: uncultured Desulfobacter sp. isolate d0620cd2-44ed-4ad5-9930-dc425a2a51ce genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacter uncultured Desulfobacter sp.
172331 172331 PRJNA1046144_P_NODE_41161_length_268_cov_2.170854_g40866_i0 PRJNA1046144 41161 268 2.170854 5.81788872 Candidatus Desulfofervidus auxilii 1621989 Bacteria Bacteria 172 1.81e-38   NTclustered gi|1001906061|gb|CP013015.1| 1621989 g40866 i0 80.081 302.350746268657 246 38 91 6 3 245 267619 267856 Candidatus Desulfofervidus auxilii strain HS1 genome blastn 81030 172 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Desulfofervidia Candidatus Desulfofervidales Candidatus Desulfofervidaceae Candidatus Desulfofervidus Candidatus Desulfofervidus auxilii
21849355 21849355 PRJNA1046144_P_NODE_48718_length_250_cov_2.298343_g48423_i0 PRJNA1046144 48718 250 2.298343 5.7458575 Desulfolutivibrio sulfoxidireducens 2773299 Bacteria Bacteria 63.9 1.05e-5   NTclustered gi|1863426051|gb|CP045506.1| 2773299 g48423 i0 81.25 0.992 80 13 32 2 90 168 2276787 2276709 Desulfolutivibrio sulfoxidireducens strain DSM 106783 chromosome, complete genome blastn 248 63.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfolutivibrio Desulfolutivibrio sulfoxidireducens
28077437 28077437 PRJNA1046144_P_NODE_13385_length_438_cov_1.804878_g13090_i0 PRJNA1046144 13385 438 1.804878 7.90536564 Desulfobulbus sp. 895 Bacteria Bacteria 78.6 7.87e-14   NR MDD2467259.1 895 g13090 i0 75 1.12328767123288 52 13 35.6 0 436 281 359 410 MDD2467259.1 Bcr/CflA family multidrug efflux MFS transporter [Desulfobulbus sp.] diamond 492 78.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;