RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1046144", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1046144 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1446651 1446651 PRJNA1046144_P_NODE_21622_length_352_cov_1.607774_g21327_i0 PRJNA1046144 21622 352 1.607774 5.65936448 Borrelia sp. HM 1882662 Bacteria Bacteria 52.8 0.033   NTclustered gi|2058274153|dbj|AP024401.1| 1882662 g21327 i0 100 0.0795454545454545 28 0 8 0 271 298 289290 289317 Borrelia sp. HM DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia sp. HM
9937314 9937314 PRJNA1046144_P_NODE_4088_length_769_cov_4.615714_g1343_i1 PRJNA1046144 4088 769 4.615714 35.49484066 Borreliella 64895 Bacteria Bacteria 54.7 0.021   NTclustered gi|2537508502|gb|CP124110.1| 64897 g1343 i1 94.286 0.0910273081924577 35 2 5 0 714 748 24466 24500 Borreliella bissettiae strain Pgeb plasmid cp26, complete sequence blastn 70 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella bissettiae
21411413 21411413 PRJNA1046144_P_NODE_61557_length_231_cov_1.345679_g61262_i0 PRJNA1046144 61557 231 1.345679 3.10851849 Treponema 157 Bacteria Bacteria 322 1.42e-83   NTclustered gi|2265127813|gb|CP051195.1| 120682 g61262 i0 91.775 10.1818181818182 231 19 100 0 1 231 1578271 1578041 Treponema sp. OMZ 803 strain BF2M chromosome, complete genome blastn 2352 322 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 803

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;