RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1046144", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA1046144 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26655092 26655092 PRJNA1046144_P_NODE_58321_length_234_cov_0.872727_g58026_i0 PRJNA1046144 58321 234 0.872727 2.04218118 Acidobacteriota bacterium 1978231 Bacteria Bacteria 129 1.55e-33   NR MEE2793068.1 1978231 g58026 i0 76.6 3.93589743589744 77 18 98.7 0 231 1 189 265 MEE2793068.1 glutamate-5-semialdehyde dehydrogenase [Acidobacteriota bacterium] diamond 921 129 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27564058 27564058 PRJNA1046144_P_NODE_61124_length_232_cov_0.883436_g60829_i0 PRJNA1046144 61124 232 0.883436 2.04957152 Bacteria 2 Bacteria Bacteria 95.1 7.379999999999999e-23   NR MCU1288975.1 1978231 g60829 i0 82 3.23275862068966 50 9 64.7 0 2 151 97 146 MCU1288975.1 GCN5-related N-acetyltransferase [Acidobacteriota bacterium] diamond 750 95.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28827077 28827077 PRJNA1046144_P_NODE_26208_length_324_cov_3.945098_g25913_i0 PRJNA1046144 26208 324 3.945098 12.78211752 Pseudomonadati 3379134 Bacteria Bacteria 77.4 6.34e-14   NR MDY7094683.1 1978231 g25913 i0 42.6 3.88888888888889 108 58 96.3 1 6 317 445 552 MDY7094683.1 type I polyketide synthase [Acidobacteriota bacterium] diamond 1260 77.8 0.994858611825193 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29079948 29079948 PRJNA1046144_P_NODE_50968_length_245_cov_3.005682_g50673_i0 PRJNA1046144 50968 245 3.005682 7.3639209 Terriglobia 204432 Bacteria Bacteria 56.6 4.1e-7   NR HEX3744568.1 2212468 g50673 i0 61.7 1.64081632653061 47 15 53.9 2 244 113 249 295 HEX3744568.1 SGNH/GDSL hydrolase family protein [Bryobacteraceae bacterium] diamond 402 57 0.992982456140351 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29845718 29845718 PRJNA1046144_P_NODE_57071_length_234_cov_2.218182_g56776_i0 PRJNA1046144 57071 234 2.218182 5.19054588 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 119 4.59e-32   NR MFI5168967.1 2910147 g56776 i0 72.7 3.94871794871795 77 21 98.7 0 233 3 38 114 MFI5168967.1 asparaginase domain-containing protein [Vicinamibacterales bacterium] diamond 924 119 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
30762029 30762029 PRJNA1046144_P_NODE_39114_length_274_cov_1.312195_g38819_i0 PRJNA1046144 39114 274 1.312195 3.5954143 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 95.1 2.19e-20   NR HEX5715372.1 2651171 g38819 i0 50.5 3.93065693430657 91 45 99.6 0 1 273 2043 2133 HEX5715372.1 SDR family NAD(P)-dependent oxidoreductase [Thermoanaerobaculia bacterium] diamond 1077 95.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
32501575 32501575 PRJNA1046144_P_NODE_53359_length_240_cov_1.684211_g53064_i0 PRJNA1046144 53359 240 1.684211 4.0421064 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 42.4 0.0496   NR HKN61173.1 2952895 g53064 i0 43.9 0.5125 41 23 51.3 0 184 62 510 550 HKN61173.1 TonB-dependent receptor [Candidatus Acidiferrales bacterium] diamond 123 42.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;