RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1046144" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA1046144 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11212410 11212410 PRJNA1046144_P_NODE_25649_length_327_cov_2.038760_g25354_i0 PRJNA1046144 25649 327 2.03876 6.6667452 Eukaryota 2759 Plants Plants 599 8.759999999999997e-167   NTclustered gi|1714003650|gb|MN243923.1| 3079 g25354 i0 99.694 99.9357798165138 327 1 100 0 1 327 494 820 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 32679 599 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
16311883 16311883 PRJNA1046144_P_NODE_71453_length_214_cov_5.089655_g71158_i0 PRJNA1046144 71453 214 5.089655 10.8918617 Eukaryota 2759 Plants Plants 390 3.519999999999999e-104   NTclustered gi|1201359270|gb|MF040792.1| 3078 g71158 i0 99.533 100 214 1 100 0 1 214 338 125 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 21400 390 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
18861087 18861087 PRJNA1046144_P_NODE_70915_length_219_cov_2.866667_g70620_i0 PRJNA1046144 70915 219 2.866667 6.27800073 Eukaryota 2759 Plants Plants 405 1.29e-108   NTclustered gi|1714003650|gb|MN243923.1| 3079 g70620 i0 100 99.0639269406393 219 0 100 0 1 219 82 300 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 21695 405 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
27501353 27501353 PRJNA1046144_P_NODE_60683_length_232_cov_0.883436_g60388_i0 PRJNA1046144 60683 232 0.883436 2.04957152 Eukaryota 2759 Plants Plants 65.5 2.95e-10   NR WIA32047.1 3088 g60388 i0 44.9 10.6681034482759 78 41 98.3 1 3 230 27 104 WIA32047.1 hypothetical protein OEZ86_002899 [Tetradesmus obliquus] diamond 2475 65.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;