RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1046144", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1046144 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18024461 18024461 PRJNA1046144_P_NODE_58735_length_233_cov_1.317073_g58440_i0 PRJNA1046144 58735 233 1.317073 3.06878009 Metazoa 33208 Nematoda Nematoda 137 5.4799999999999986e-40   NR KIH42226.1 51022 g58440 i0 85.5 2.81974248927039 76 11 97.9 0 1 228 1 76 KIH42226.1 ankyrin repeat protein, partial [Ancylostoma duodenale] diamond 657 138 0.992753623188406 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
21849744 21849744 PRJNA1046144_P_NODE_67998_length_227_cov_0.911392_g67703_i0 PRJNA1046144 67998 227 0.911392 2.06885984 Auanema sp. JU1783 2878363 Nematoda Nematoda 146 6.41e-44   NR CAI4222216.1 2878363 g67703 i0 93.3 0.991189427312775 75 5 99.1 0 225 1 3 77 CAI4222216.1 unnamed protein product [Auanema sp. JU1783] diamond 225 146 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
27604169 27604169 PRJNA1046144_P_NODE_66104_length_228_cov_1.012579_g65809_i0 PRJNA1046144 66104 228 1.012579 2.30868012 Trichinella nativa 6335 Nematoda Nematoda 43.9 8.25e-4   NR KRZ47273.1 6335 g65809 i0 77.4 0.407894736842105 31 3 35.5 1 204 124 8 38 KRZ47273.1 hypothetical protein T02_1459 [Trichinella nativa] diamond 93 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;