RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1046144", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1046144 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7387154 7387154 PRJNA1046144_P_NODE_61406_length_231_cov_1.765432_g61111_i0 PRJNA1046144 61406 231 1.765432 4.07814792 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 198 2.51e-46   NTclustered gi|2414483|emb|Y00055.1| 5656 g61111 i0 98.23 70.5800865800866 113 2 49 0 2 114 8175 8063 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 16304 200 0.99 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
11212320 11212320 PRJNA1046144_P_NODE_18249_length_380_cov_1.311897_g17954_i0 PRJNA1046144 18249 380 1.311897 4.9852086 Trypanosoma 5690 Euglenozoa other_Eukaryota 514 3.84e-141   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g17954 i0 94.595 139.921052631579 333 16 87 2 49 380 4700 4369 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 53170 514 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
12488381 12488381 PRJNA1046144_P_NODE_72150_length_188_cov_4.840336_g71855_i0 PRJNA1046144 72150 188 4.840336 9.09983168 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 252 1.48e-62   NTclustered gi|2414483|emb|Y00055.1| 5656 g71855 i0 90.957 121.781914893617 188 16 100 1 1 188 6841 7027 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 22895 254 0.992125984251969 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;