RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1046144" and tax_clade = "Bacteria candidate phyla"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA1046144 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9099692 9099692 PRJNA1046144_P_NODE_31668_length_299_cov_3.756522_g31373_i0 PRJNA1046144 31668 299 3.756522 11.23200078 Vermiphilus pyriformis 1763547 Bacteria Bacteria 553 6.25e-153   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g31373 i0 100 76.3311036789298 299 0 100 0 1 299 974250 974548 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 22823 553 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis
11651527 11651527 PRJNA1046144_P_NODE_9670_length_508_cov_3.271071_g9377_i0 PRJNA1046144 9670 508 3.271071 16.61704068 Vermiphilus pyriformis 1763547 Bacteria Bacteria 933 0   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g9377 i0 99.803 94.4685039370079 508 1 100 0 1 508 973276 972769 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 47990 933 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis
26908681 26908681 PRJNA1046144_P_NODE_46642_length_255_cov_1.575269_g46347_i0 PRJNA1046144 46642 255 1.575269 4.01693595 Patescibacteria group bacterium 2052139 Bacteria Bacteria 51.6 2.4e-5   NR MEK7107252.1 2052139 g46347 i0 65.8 0.447058823529412 38 13 44.7 0 3 116 118 155 MEK7107252.1 hypothetical protein [Patescibacteria group bacterium] diamond 114 51.6 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31330727 31330727 PRJNA1046144_P_NODE_63336_length_230_cov_0.894410_g63041_i0 PRJNA1046144 63336 230 0.89441 2.057143 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 109 9.53e-26   NR MEO5949512.1 1917697 g63041 i0 65.7 0.91304347826087 70 24 91.3 0 19 228 415 484 MEO5949512.1 hypothetical protein [Candidatus Saccharimonas sp.] diamond 210 109 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;