RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1046144", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1046144 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14201117 14201117 PRJNA1046144_P_NODE_46492_length_255_cov_3.290323_g46197_i0 PRJNA1046144 46492 255 3.290323 8.39032365 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 113 1.05e-20   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g46197 i0 86.111 40.0509803921569 108 11 42 2 1 108 4470 4367 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10213 113 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
19297605 19297605 PRJNA1046144_P_NODE_13676_length_433_cov_5.887363_g13381_i0 PRJNA1046144 13676 433 5.887363 25.49228179 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 717 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g13381 i0 96.552 41.554272517321 435 11 100 4 1 433 7098 6666 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 17993 717 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20135552 20135552 PRJNA1046144_P_NODE_3676_length_808_cov_4.235453_g3433_i0 PRJNA1046144 3676 808 4.235453 34.22246024 Vermamoeba 1260114 Tubulinea other_Eukaryota 1332 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g3433 i0 96.411 49.8898514851485 808 29 100 0 1 808 5784 4977 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 40311 1338 0.995515695067265 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22685870 22685870 PRJNA1046144_P_NODE_25618_length_327_cov_2.782946_g25323_i0 PRJNA1046144 25618 327 2.782946 9.10023342 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 566 8.879999999999998e-157   NTclustered gi|300078496|gb|GU001158.1| 5778 g25323 i0 97.859 41.1009174311927 327 7 100 0 1 327 1228 902 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13440 566 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23124417 23124417 PRJNA1046144_P_NODE_31919_length_298_cov_4.777293_g31624_i0 PRJNA1046144 31919 298 4.777293 14.23633314 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 484 2.3e-132   NTclustered gi|300078496|gb|GU001158.1| 5778 g31624 i0 95.973 23.6879194630872 298 12 100 0 1 298 1240 1537 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7059 484 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;