RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1046144", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA1046144 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2722520 2722520 PRJNA1046144_P_NODE_27403_length_318_cov_2.658635_g27108_i0 PRJNA1046144 27403 318 2.658635 8.4544593 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 488 1.9199999999999997e-133   NTclustered gi|330902855|gb|JF298253.1| 1017091 g27108 i0 94.357 75.4905660377358 319 16 100 2 1 318 1615 1932 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 24006 488 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
3998752 3998752 PRJNA1046144_P_NODE_37324_length_279_cov_10.438095_g37029_i0 PRJNA1046144 37324 279 10.438095 29.12228505 Protacanthamoeba sp. GERE3 1002215 Discosea other_Eukaryota 211 4.01e-50   NTclustered gi|327391627|gb|HM363625.1| 1002215 g37029 i0 81.72 27.8960573476703 279 27 100 17 1 279 304 558 Protacanthamoeba sp. GERE3 small subunit ribosomal RNA gene, partial sequence blastn 7783 211 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba sp. GERE3
6550428 6550428 PRJNA1046144_P_NODE_44386_length_260_cov_2.638743_g44091_i0 PRJNA1046144 44386 260 2.638743 6.8607318 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 364 2.679999999999999e-96   NTclustered gi|300078498|gb|GU001160.1| 5755 g44091 i0 91.76 1.02692307692308 267 15 100 6 1 260 5658 5924 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 267 364 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12925791 12925791 PRJNA1046144_P_NODE_28371_length_314_cov_1.257143_g28076_i0 PRJNA1046144 28371 314 1.257143 3.94742902 Vannella planctonica 1678069 Discosea other_Eukaryota 553 6.609999999999998e-153   NTclustered gi|861554250|gb|KP719193.1| 1678069 g28076 i0 98.408 96.171974522293 314 5 100 0 1 314 616 929 Vannella planctonica strain A2FBB small subunit ribosomal RNA gene, partial sequence blastn 30198 553 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella planctonica
13762508 13762508 PRJNA1046144_P_NODE_31691_length_299_cov_2.504348_g31396_i0 PRJNA1046144 31691 299 2.504348 7.48800052 Acanthamoeba 5754 Discosea other_Eukaryota 553 6.25e-153   NTclustered gi|1427939342|gb|MH620776.1| 5756 g31396 i0 100 99.9899665551839 299 0 100 0 1 299 663 961 Acanthamoeba sp. strain Krym small subunit ribosomal RNA gene, partial sequence blastn 29897 553 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
13762816 13762816 PRJNA1046144_P_NODE_66231_length_228_cov_0.905660_g65936_i0 PRJNA1046144 66231 228 0.90566 2.0649048 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 422 1.34e-113   NTclustered gi|1497462138|gb|MG945010.1| 5755 g65936 i0 100 100 228 0 100 0 1 228 879 1106 Acanthamoeba castellanii isolate PRZT013 18S ribosomal RNA gene, partial sequence blastn 22800 422 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18023630 18023630 PRJNA1046144_P_NODE_12955_length_444_cov_2.448000_g12660_i0 PRJNA1046144 12955 444 2.448 10.86912 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 656 0   NTclustered gi|330902855|gb|JF298253.1| 1017091 g12660 i0 93.512 47.8693693693694 447 19 100 8 1 444 1303 864 Cochliopodium larifeili clone 901 18S ribosomal RNA gene, partial sequence blastn 21254 656 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
18860500 18860500 PRJNA1046144_P_NODE_15015_length_415_cov_2.826590_g14720_i0 PRJNA1046144 15015 415 2.82659 11.7303485 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 710 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g14720 i0 97.59 22.7638554216867 415 9 99 1 1 414 4029 4443 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9447 717 0.99023709902371 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20573265 20573265 PRJNA1046144_P_NODE_32997_length_294_cov_3.728889_g32702_i0 PRJNA1046144 32997 294 3.728889 10.96293366 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 508 1.35e-139   NTclustered gi|300078498|gb|GU001160.1| 5755 g32702 i0 97.959 33.4761904761905 294 4 100 2 1 294 5363 5654 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9842 508 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21848959 21848959 PRJNA1046144_P_NODE_26498_length_323_cov_1.700787_g26203_i0 PRJNA1046144 26498 323 1.700787 5.49354201 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 544 4.1e-150   NTclustered gi|300078498|gb|GU001160.1| 5755 g26203 i0 97.214 41.5201238390093 323 5 100 2 1 323 7487 7805 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13411 544 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
25235379 25235379 PRJNA1046144_P_NODE_31560_length_300_cov_1.246753_g31265_i0 PRJNA1046144 31560 300 1.246753 3.740259 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 555 1.7399999999999995e-153   NTclustered gi|909719646|gb|KT185626.1| 5755 g31265 i0 100 61.9766666666667 300 0 100 0 1 300 3585 3884 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18593 555 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;