RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1044115" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1044115 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12925387 12925387 PRJNA1044115_P_NODE_5711_length_660_cov_7.478705_g5541_i0 PRJNA1044115 5711 660 7.478705 49.359453 Desulfolithobacter dissulfuricans 2795293 Bacteria Bacteria 135 6.34e-27   NTclustered gi|2304357171|dbj|AP024233.1| 2795293 g5541 i0 77.637 29.0166666666667 237 43 35 7 59 286 1927611 1927376 Desulfobulbaceae bacterium GF1 GF1 DNA, complete genome blastn 19151 135 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfolithobacter Desulfolithobacter dissulfuricans
31172365 31172365 PRJNA1044115_P_NODE_37395_length_248_cov_0.891429_g37211_i0 PRJNA1044115 37395 248 0.891429 2.21074392 Desulfuromonas sp. TF 1232410 Bacteria Bacteria 44.7 0.00777   NR WP_051360660.1 1232410 g37211 i0 32.9 0.846774193548387 70 47 84.7 0 225 16 91 160 WP_051360660.1 glycosyltransferase family 2 protein [Desulfuromonas sp. TF] diamond 210 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. TF

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;