RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1044115", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1044115 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24397468 24397468 PRJNA1044115_P_NODE_27420_length_279_cov_2.669903_g27236_i0 PRJNA1044115 27420 279 2.669903 7.44902937 Myxococcales bacterium 2026763 Bacteria Bacteria 394 3.709999999999999e-105   NTclustered gi|1958041644|gb|CP064980.1| 2026763 g27236 i0 92.115 137.516129032258 279 22 100 0 1 279 1308329 1308607 Myxococcales bacterium isolate Fred_18-Q3-R57-64_BAT3C.417 chromosome blastn 38367 394 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27161374 27161374 PRJNA1044115_P_NODE_43502_length_228_cov_2.864516_g43318_i0 PRJNA1044115 43502 228 2.864516 6.53109648 Cystobacter sp. 1965334 Bacteria Bacteria 43.5 0.00747   NR MET0405238.1 1965334 g43318 i0 35.8 0.881578947368421 67 43 88.2 0 19 219 9 75 MET0405238.1 hypothetical protein [Cystobacter sp.] diamond 201 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter sp.
29719112 29719112 PRJNA1044115_P_NODE_15090_length_379_cov_1.313725_g14906_i0 PRJNA1044115 15090 379 1.313725 4.97901775 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.4 0.0168   NR RLB60749.1 2026735 g14906 i0 48.9 0.356200527704486 45 23 35.6 0 210 344 175 219 RLB60749.1 MAG: hypothetical protein DRI90_12965, partial [Deltaproteobacteria bacterium] diamond 135 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;