RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1044115", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1044115 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8661988 8661988 PRJNA1044115_P_NODE_33747_length_253_cov_2.622222_g33563_i0 PRJNA1044115 33747 253 2.622222 6.63422166 Herpetosiphon 64 Bacteria Bacteria 457 4.16e-124   NTclustered gi|470482680|ref|NR_076546.1| 65 g33563 i0 99.209 62.1146245059289 253 2 100 0 1 253 484 736 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 15715 457 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
14200052 14200052 PRJNA1044115_P_NODE_26752_length_282_cov_2.732057_g26568_i0 PRJNA1044115 26752 282 2.732057 7.70440074 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 246 1.11e-60   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g26568 i0 83.712 506.170212765957 264 39 93 4 1 263 4992892 4992632 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 142740 246 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
16748124 16748124 PRJNA1044115_P_NODE_10974_length_453_cov_3.784211_g10790_i0 PRJNA1044115 10974 453 3.784211 17.14247583 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 126 2.5499999999999998e-24   NTclustered gi|2893358453|emb|OZ220745.1| 2026734 g10790 i0 78.788 21.2030905077263 198 35 43 6 104 298 2300329 2300136 MAG: Dehalococcoidia bacterium isolate d99f35f8-e104-4752-81ca-da635d51ba71 genome assembly, chromosome: 1 blastn 9605 126 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
21848084 21848084 PRJNA1044115_P_NODE_10378_length_469_cov_1.911616_g10194_i0 PRJNA1044115 10378 469 1.911616 8.96547904 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 117 1.59e-21   NTclustered gi|2874253835|emb|OY969885.1| 1672391 g10194 i0 75.725 3.9637526652452 276 43 55 17 18 275 2093907 2093638 MAG: uncultured Chloroflexia bacterium isolate MFD01275.bin.c.5 genome assembly, chromosome: 1 blastn 1859 117 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;