RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1044115", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1044115 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3559502 3559502 PRJNA1044115_P_NODE_31623_length_261_cov_24.361702_g31439_i0 PRJNA1044115 31623 261 24.361702 63.58404222 Bacteriovorax 146784 Bacteria Bacteria 300 7.7e-77   NTclustered gi|1700689994|gb|CP030035.1| 960 g31439 i0 87.405 77.4827586206897 262 31 100 2 1 261 1661766 1661506 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 20223 300 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
12487696 12487696 PRJNA1044115_P_NODE_21630_length_313_cov_1.241667_g21446_i0 PRJNA1044115 21630 313 1.241667 3.88641771 Bacteriovorax 146784 Bacteria Bacteria 451 2.4700000000000003e-122   NTclustered gi|1700689994|gb|CP030035.1| 960 g21446 i0 92.652 445.424920127796 313 23 100 0 1 313 1661891 1662203 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 139418 451 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
12925352 12925352 PRJNA1044115_P_NODE_42651_length_236_cov_2.766871_g42467_i0 PRJNA1044115 42651 236 2.766871 6.52981556 Bdellovibrio sp. HAGR004 3113895 Bacteria Bacteria 431 2.33e-116   NTclustered gi|2663432256|dbj|AP029176.1| 3113895 g42467 i0 99.576 29.6398305084746 236 1 100 0 1 236 1156756 1156991 Bdellovibrio sp. HAGR004 DNA, complete genome blastn 6995 431 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HAGR004
16311204 16311204 PRJNA1044115_P_NODE_26953_length_281_cov_9.581731_g26769_i0 PRJNA1044115 26953 281 9.581731 26.92466411 Bacteriovoracales 2024979 Bacteria Bacteria 363 1.0499999999999999e-95   NTclustered gi|2907625691|emb|OZ223251.1| 2081706 g26769 i0 91.144 258.110320284698 271 19 96 5 1 269 89525 89258 MAG: Bacteriovoracaceae bacterium isolate 56684ba0-df17-47c9-bcf5-ee076427a4fa genome assembly, chromosome: 1 blastn 72529 363 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;