contig_metadata
16 rows where bioproject = "PRJNA1044115" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1008798 | 1008798 | PRJNA1044115_P_NODE_31121_length_264_cov_1.225131_g30937_i0 | PRJNA1044115 | 31121 | 264 | 1.225131 | 3.23434584 | Streptococcus | 1301 | Bacteria | Bacteria | 472 | 1.5599999999999998e-128 | NTclustered | gi|926460225|gb|CP012588.1| | 1308 | g30937 | i0 | 98.864 | 538.825757575758 | 264 | 3 | 100 | 0 | 1 | 264 | 1468700 | 1468963 | Streptococcus thermophilus strain MN-BM-A01, complete genome | blastn | 142250 | 472 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus thermophilus | ||
| 2721825 | 2721825 | PRJNA1044115_P_NODE_23723_length_298_cov_3.413333_g23539_i0 | PRJNA1044115 | 23723 | 298 | 3.413333 | 10.17173234 | Lactobacillus iners | 147802 | Bacteria | Bacteria | 551 | 2.239999999999999e-152 | NTclustered | gi|2769739957|gb|CP160078.1| | 147802 | g23539 | i0 | 100 | 519.097315436242 | 298 | 0 | 100 | 0 | 1 | 298 | 3004 | 3301 | Lactobacillus iners strain 0998_735_1_CBA_90B_S800 chromosome, complete genome | blastn | 154691 | 551 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Lactobacillus iners | ||
| 3559536 | 3559536 | PRJNA1044115_P_NODE_44103_length_204_cov_5.389313_g43919_i0 | PRJNA1044115 | 44103 | 204 | 5.389313 | 10.99419852 | Staphylococcus | 1279 | Bacteria | Bacteria | 377 | 2.59e-100 | NTclustered | gi|1679580126|dbj|LC481680.1| | 1283 | g43919 | i0 | 100 | 110 | 204 | 0 | 100 | 0 | 1 | 204 | 209 | 412 | Staphylococcus haemolyticus NGB-R38 gene for 16S ribosomal RNA, partial sequence | blastn | 22440 | 377 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus haemolyticus | ||
| 7386577 | 7386577 | PRJNA1044115_P_NODE_32106_length_260_cov_1.176471_g31922_i0 | PRJNA1044115 | 32106 | 260 | 1.176471 | 3.0588246 | Lysinibacillus | 400634 | Bacteria | Bacteria | 200 | 8e-47 | NTclustered | gi|2733040913|gb|CP155468.1| | 1714840 | g31922 | i0 | 83.721 | 123.623076923077 | 215 | 32 | 82 | 3 | 48 | 260 | 4413611 | 4413824 | Lysinibacillus telephonicus strain FSL R5-0572 chromosome, complete genome | blastn | 32142 | 200 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Lysinibacillus | Lysinibacillus telephonicus | ||
| 9936930 | 9936930 | PRJNA1044115_P_NODE_18288_length_341_cov_2.417910_g18104_i0 | PRJNA1044115 | 18288 | 341 | 2.41791 | 8.2450731 | Streptococcus | 1301 | Bacteria | Bacteria | 630 | 3.2499999999999986e-176 | NTclustered | gi|926460225|gb|CP012588.1| | 1308 | g18104 | i0 | 100 | 544.143695014663 | 341 | 0 | 100 | 0 | 1 | 341 | 162881 | 163221 | Streptococcus thermophilus strain MN-BM-A01, complete genome | blastn | 185553 | 630 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus thermophilus | ||
| 9936949 | 9936949 | PRJNA1044115_P_NODE_21948_length_310_cov_3.675105_g21764_i0 | PRJNA1044115 | 21948 | 310 | 3.675105 | 11.3928255 | Bacillales | 1385 | Bacteria | Bacteria | 556 | 5.03e-154 | NTclustered | gi|2505679996|gb|CP118820.1| | 1282 | g21764 | i0 | 99.032 | 535.941935483871 | 310 | 3 | 100 | 0 | 1 | 310 | 2418196 | 2418505 | Staphylococcus epidermidis strain 7057 chromosome, complete genome | blastn | 166142 | 556 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 20572481 | 20572481 | PRJNA1044115_P_NODE_22717_length_305_cov_1.732759_g22533_i0 | PRJNA1044115 | 22717 | 305 | 1.732759 | 5.28491495 | Lactobacillus iners | 147802 | Bacteria | Bacteria | 564 | 2.95e-156 | NTclustered | gi|1818008110|gb|CP049223.1| | 147802 | g22533 | i0 | 100 | 493.737704918033 | 305 | 0 | 100 | 0 | 1 | 305 | 55825 | 56129 | Lactobacillus iners strain C0094A1 chromosome, complete genome | blastn | 150590 | 564 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Lactobacillus iners | ||
| 21410850 | 21410850 | PRJNA1044115_P_NODE_33517_length_254_cov_2.066298_g33333_i0 | PRJNA1044115 | 33517 | 254 | 2.066298 | 5.24839692 | Streptococcus | 1301 | Bacteria | Bacteria | 464 | 2.4999999999999994e-126 | NTclustered | gi|1654254190|emb|LR594049.1| | 1302 | g33333 | i0 | 99.606 | 344.007874015748 | 254 | 1 | 100 | 0 | 1 | 254 | 641127 | 640874 | Streptococcus gordonii strain NCTC10231 genome assembly, chromosome: 1 | blastn | 87378 | 464 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus gordonii | ||
| 21410864 | 21410864 | PRJNA1044115_P_NODE_40797_length_243_cov_1.411765_g40613_i0 | PRJNA1044115 | 40797 | 243 | 1.411765 | 3.43058895 | Streptococcus | 1301 | Bacteria | Bacteria | 394 | 3.16e-105 | NTclustered | gi|1780487221|gb|CP046335.1| | 28037 | g40613 | i0 | 95.885 | 99.9753086419753 | 243 | 10 | 100 | 0 | 1 | 243 | 455301 | 455059 | Streptococcus mitis strain FDAARGOS_684 chromosome, complete genome | blastn | 24294 | 394 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus mitis | ||
| 21848257 | 21848257 | PRJNA1044115_P_NODE_21698_length_312_cov_2.184100_g21514_i0 | PRJNA1044115 | 21698 | 312 | 2.1841 | 6.814392 | Streptococcus oralis | 1303 | Bacteria | Bacteria | 542 | 1.42e-149 | NTclustered | gi|1708318049|gb|CP034442.1| | 1458253 | g21514 | i0 | 98.077 | 348.076923076923 | 312 | 4 | 100 | 2 | 1 | 312 | 1028681 | 1028990 | Streptococcus oralis subsp. dentisani strain F0392 chromosome, complete genome | blastn | 108600 | 542 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus oralis | ||
| 22685687 | 22685687 | PRJNA1044115_P_NODE_5478_length_674_cov_3.633943_g5309_i0 | PRJNA1044115 | 5478 | 674 | 3.633943 | 24.49277582 | Staphylococcus | 1279 | Bacteria | Bacteria | 1212 | 0 | NTclustered | gi|2866855000|gb|CP064560.1| | 1282 | g5309 | i0 | 99.255 | 543.413946587537 | 671 | 5 | 99 | 0 | 1 | 671 | 962776 | 962106 | Staphylococcus epidermidis strain UMCG361 chromosome, complete genome | blastn | 366261 | 1212 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 23961221 | 23961221 | PRJNA1044115_P_NODE_6799_length_599_cov_2.406844_g6626_i0 | PRJNA1044115 | 6799 | 599 | 2.406844 | 14.41699556 | root | 1 | Root_unresolved | Root_unresolved | 1107 | 0 | NTclustered | gi|1796975023|gb|CP033086.1| | 1280 | g6626 | i0 | 100 | 43.3722871452421 | 599 | 0 | 100 | 0 | 1 | 599 | 2427100 | 2426502 | Staphylococcus aureus strain WH9628 chromosome | blastn | 25980 | 1107 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 24397652 | 24397652 | PRJNA1044115_P_NODE_40060_length_244_cov_1.532164_g39876_i0 | PRJNA1044115 | 40060 | 244 | 1.532164 | 3.73848016 | Staphylococcus epidermidis | 1282 | Bacteria | Bacteria | 451 | 1.86e-122 | NTclustered | gi|1821213593|gb|CP043803.1| | 1282 | g39876 | i0 | 100 | 26.0614754098361 | 244 | 0 | 100 | 0 | 1 | 244 | 41124 | 41367 | Staphylococcus epidermidis strain SESURV_p3_1362 plasmid unnamed2 | blastn | 6359 | 451 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 26877277 | 26877277 | PRJNA1044115_P_NODE_29841_length_269_cov_1.408163_g29657_i0 | PRJNA1044115 | 29841 | 269 | 1.408163 | 3.78795847 | Enterococcus faecalis | 1351 | Bacteria | Bacteria | 115 | 2.04e-31 | NR | WP_375855466.1 | 1351 | g29657 | i0 | 72.7 | 0.981412639405205 | 88 | 24 | 98.1 | 0 | 266 | 3 | 1 | 88 | WP_375855466.1 hypothetical protein [Enterococcus faecalis] | diamond | 264 | 115 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Enterococcaceae | Enterococcus | Enterococcus faecalis | ||
| 28930065 | 28930065 | PRJNA1044115_P_NODE_36248_length_250_cov_0.881356_g36064_i0 | PRJNA1044115 | 36248 | 250 | 0.881356 | 2.20339 | Lachnospiraceae bacterium | 1898203 | Bacteria | Bacteria | 42.4 | 0.049 | NR | MCR4696246.1 | 1898203 | g36064 | i0 | 36.4 | 0.66 | 55 | 35 | 66 | 0 | 171 | 7 | 178 | 232 | MCR4696246.1 hypothetical protein [Lachnospiraceae bacterium] | diamond | 165 | 42.4 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Lachnospiraceae bacterium | |||
| 32280045 | 32280045 | PRJNA1044115_P_NODE_40239_length_244_cov_0.912281_g40055_i0 | PRJNA1044115 | 40239 | 244 | 0.912281 | 2.22596564 | Paenibacillus solisilvae | 2486751 | Bacteria | Bacteria | 42 | 0.0231 | NR | WP_379191403.1 | 2486751 | g40055 | i0 | 31.7 | 0.504098360655738 | 41 | 28 | 50.4 | 0 | 20 | 142 | 73 | 113 | WP_379191403.1 TM2 domain-containing protein [Paenibacillus solisilvae] | diamond | 123 | 42 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus solisilvae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;