RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1044115", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1044115 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5274206 5274206 PRJNA1044115_P_NODE_24365_length_294_cov_4.923077_g24181_i0 PRJNA1044115 24365 294 4.923077 14.47384638 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 344 4.02e-90   NTclustered gi|2874254096|emb|OY970179.1| 412056 g24181 i0 89.668 70.0442176870748 271 26 92 2 1 271 1727991 1727723 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 20593 344 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
11650206 11650206 PRJNA1044115_P_NODE_6670_length_605_cov_5.419173_g6497_i0 PRJNA1044115 6670 605 5.419173 32.78599665 Luteolibacter luteus 2728835 Bacteria Bacteria 996 0   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g6497 i0 96.376 266.844628099174 607 18 100 3 1 605 3804532 3805136 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 161441 996 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
16311245 16311245 PRJNA1044115_P_NODE_6533_length_612_cov_4.081633_g6360_i0 PRJNA1044115 6533 612 4.081633 24.97959396 Luteolibacter 518753 Bacteria Bacteria 1059 0   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g6360 i0 97.876 287.834967320261 612 13 100 0 1 612 3805478 3806089 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 176155 1059 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;