RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1044115" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 9 ✖

bioproject 1

  • PRJNA1044115 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4836829 4836829 PRJNA1044115_P_NODE_14504_length_387_cov_4.783439_g14320_i0 PRJNA1044115 14504 387 4.783439 18.51190893 Naegleria 5761 Heterolobosea other_Eukaryota 715 0   NTclustered gi|2651357780|gb|PP174296.1| 36333 g14320 i0 100 44.0594315245478 387 0 100 0 1 387 2299 1913 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17051 715 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
5274288 5274288 PRJNA1044115_P_NODE_29705_length_269_cov_3.525510_g29521_i0 PRJNA1044115 29705 269 3.52551 9.4836219 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 459 1.2399999999999996e-124   NTclustered gi|11466174|ref|NC_002573.1| 5762 g29521 i0 97.398 23.003717472119 269 7 100 0 1 269 605 337 Naegleria gruberi mitochondrion, complete genome blastn 6188 459 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
5274463 5274463 PRJNA1044115_P_NODE_42285_length_239_cov_4.379518_g42101_i0 PRJNA1044115 42285 239 4.379518 10.46704802 Naegleria clarki 36333 Heterolobosea other_Eukaryota 442 1.0899999999999994e-119   NTclustered gi|2651357780|gb|PP174296.1| 36333 g42101 i0 100 70.9958158995816 239 0 100 0 1 239 2731 2493 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16968 442 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
12924916 12924916 PRJNA1044115_P_NODE_13451_length_403_cov_11.700000_g13267_i0 PRJNA1044115 13451 403 11.7 47.151 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 357 7.31e-94   NTclustered gi|290979566|ref|XM_002672459.1| 5762 g13267 i0 86.269 82.1166253101737 335 38 82 7 1 331 979 1309 Naegleria gruberi beta-tubulin (NAEGRDRAFT_55423), mRNA blastn 33093 357 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14200088 14200088 PRJNA1044115_P_NODE_29332_length_271_cov_1.570707_g29148_i0 PRJNA1044115 29332 271 1.570707 4.25661597 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 473 4.4799999999999996e-129   NTclustered gi|11466174|ref|NC_002573.1| 5762 g29148 i0 98.155 7.10332103321033 271 5 100 0 1 271 1511 1241 Naegleria gruberi mitochondrion, complete genome blastn 1925 473 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18023227 18023227 PRJNA1044115_P_NODE_25075_length_291_cov_1.224771_g24891_i0 PRJNA1044115 25075 291 1.224771 3.56408361 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 156 1.9999999999999998e-33   NTclustered gi|2124405878|ref|XM_044687435.1| 51637 g24891 i0 83.051 2.3127147766323 177 25 60 4 36 209 333 507 Naegleria lovaniensis uncharacterized protein (C9374_011746), partial mRNA blastn 673 156 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
18023422 18023422 PRJNA1044115_P_NODE_38975_length_246_cov_0.901734_g38791_i0 PRJNA1044115 38975 246 0.901734 2.21826564 Cryptobia helicis 62686 Euglenozoa other_Eukaryota 139 3.27e-36   NR AAV66339.1 62686 g38791 i0 85.2 30.6219512195122 81 12 98.8 0 245 3 284 364 AAV66339.1 heat shock protein 70 cytosolic isoform, partial [Cryptobia helicis] diamond 7533 139 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Cryptobia Cryptobia helicis
19297354 19297354 PRJNA1044115_P_NODE_35396_length_251_cov_0.876404_g35212_i0 PRJNA1044115 35396 251 0.876404 2.19977404 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 335 2.0199999999999998e-87   NTclustered gi|290973896|ref|XM_002669637.1| 5762 g35212 i0 91.393 0.972111553784861 244 21 97 0 3 246 725 968 Naegleria gruberi pyruvate dehydrogenase kinase (NAEGRDRAFT_82050), partial mRNA blastn 244 335 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
25235072 25235072 PRJNA1044115_P_NODE_29980_length_268_cov_2.071795_g29796_i0 PRJNA1044115 29980 268 2.071795 5.5524106 Naegleria 5761 Heterolobosea other_Eukaryota 496 9.429999999999999e-136   NTclustered gi|2618963742|gb|OR769034.1| 5762 g29796 i0 100 40.0410447761194 268 0 100 0 1 268 4379 4112 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 10731 496 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;